PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00047.1.g02250.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 298aa    MW: 31463.2 Da    PI: 6.7994
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00047.1.g02250.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind92.45.1e-29211282103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.......X CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.......k 75 
                                   F+ k+y +++d++++ +i w +++nsfvv d+  f++++Lp +Fkhsnf+SFvRQLn+Y      + +   ++       +
  Zjn_sc00047.1.g02250.1.sm.mk  21 FVAKTYCMVDDPATDGVIAWGADNNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYVRALRLSAR-VVRAlegfrkvD 100
                                   9**********************************************************644333333.323345555445 PP

                                   TTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  76 ekiweFkhksFkkgkkellekikrkkse 103
                                   ++ weF+h sF +g+++ll++i r++s+
  Zjn_sc00047.1.g02250.1.sm.mk 101 PDRWEFAHVSFLRGQTHLLRRIVRRSSS 128
                                   9************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.18E-2917125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.7E-4417125IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.0E-3417125IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.2E-2621125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-112144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-115971IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-117284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MTSGVVVADA AAAAPVGVAP FVAKTYCMVD DPATDGVIAW GADNNSFVVA DPFAFSQTLL  60
PAHFKHSNFS SFVRQLNTYV RALRLSARVV RALEGFRKVD PDRWEFAHVS FLRGQTHLLR  120
RIVRRSSSNN GGGGGKRKDD GGGGGGTGEE DGAAAVAMEV ARLKREQRAI EDQVAAMWRR  180
VQETERRPKQ MLAFLVKVAG DPQVLRRLLD SSFCVDGGGA GHGLAASGSS DGAGAEIVKR  240
PRLLLDGDSA GRHAAPVIYG AGDDDVDGFF AADDVGFGVG DSGFSPQYAF PVDSTSGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-221212720131Heat shock factor protein 1
5d5v_B3e-221212720131Heat shock factor protein 1
5d5v_D3e-221212720131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9766696e-69EU976669.1 Zea mays clone 986698 heat shock factor protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152657.11e-107heat shock factor protein 1
SwissprotQ6EUG41e-97HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLA0A3L6EVM01e-106A0A3L6EVM0_MAIZE; Heat stress transcription factor C-2a
TrEMBLB4FXG71e-106B4FXG7_MAIZE; Heat stress transcription factor C-1
STRINGGRMZM2G105348_P011e-107(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-53heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]