PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00047.1.g01660.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 345aa MW: 38301.5 Da PI: 7.0806

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00047.1.g01660.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.8	1.3e-50	10	154	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk................kvka.eekewyfFskr 64 +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL+ ++ + ++ewyfFs++ Zjn_sc00047.1.g01660.1.am.mk 10 VPPGFRFHPTDEELLYYYLRKKVSFEPIDL-DVIREIDLNKLEPWDLKGagansqdlfmahadrcRIGTgPQEEWYFFSHK 89 69**************************.9***********94588999999888887644443556**** PP NAM 65 dkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 dkky+tg+r+nrat++g+Wkatg+dk+++ g+ +gl+ktLvfy+grap+g+kt+W+mheyrl Zjn_sc00047.1.g01660.1.am.mk 90 DKKYPTGTRTNRATAAGFWKATGRDKAIFLGnAGRRIGLRKTLVFYTGRAPNGKKTEWIMHEYRL 154 *************************9767888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-55	7	174	IPR003441	NAC domain
PROSITE profile	PS51005	56.812	10	174	IPR003441	NAC domain
Pfam	PF02365	3.0E-27	11	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MQPSSSPLSV PPGFRFHPTD EELLYYYLRK KVSFEPIDLD VIREIDLNKL EPWDLKGAGA 60 NSQDLFMAHA DRCRIGTGPQ EEWYFFSHKD KKYPTGTRTN RATAAGFWKA TGRDKAIFLG 120 NAGRRIGLRK TLVFYTGRAP NGKKTEWIMH EYRLDEDNVE VPEDGWVVCR VFKKNSIQRS 180 FEKPGMALGD EEELQTLTPV DQKQGRLRNQ LMHGGFPAFD PFMHLPQLAS PDATPGSSTS 240 AFMSGTPALA MNPLEMGSSS QYMAKLTTVL AGANAGEVLL SGGDRIGAVA DWSILDNLLA 300 SRQNLDQLFH GKLGGAAVEA PHHYQQQLPL LMETGASSLP RLPLH

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MQPSSSPLSV PPGFRFHPTD EELLYYYLRK KVSFEPIDLD VIREIDLNKL EPWDLKGAGA  60
NSQDLFMAHA DRCRIGTGPQ EEWYFFSHKD KKYPTGTRTN RATAAGFWKA TGRDKAIFLG  120
NAGRRIGLRK TLVFYTGRAP NGKKTEWIMH EYRLDEDNVE VPEDGWVVCR VFKKNSIQRS  180
FEKPGMALGD EEELQTLTPV DQKQGRLRNQ LMHGGFPAFD PFMHLPQLAS PDATPGSSTS  240
AFMSGTPALA MNPLEMGSSS QYMAKLTTVL AGANAGEVLL SGGDRIGAVA DWSILDNLLA  300
SRQNLDQLFH GKLGGAAVEA PHHYQQQLPL LMETGASSLP RLPLH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-48	8	176	15	167	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-48	8	176	15	167	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-48	8	176	15	167	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-48	8	176	15	167	NO APICAL MERISTEM PROTEIN
4dul_A	5e-48	8	176	15	167	NAC domain-containing protein 19
4dul_B	5e-48	8	176	15	167	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827212.1	1e-167	NAC domain-containing protein 76-like
Swissprot	Q5Z6B6	1e-101	NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBL	A0A1E5VY61	1e-167	A0A1E5VY61_9POAL; NAC domain-containing protein 76 (Fragment)
STRING	Pavir.Ab01037.1.p	1e-162	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3461	37	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	2e-83	NAC family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]