PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00045.1.g04260.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 382aa    MW: 41287 Da    PI: 8.1198
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00045.1.g04260.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.92.2e-41181257278
                                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                     CqvegC+ dls+ak+yhr+h+vCe+hskap+v+v+gle+rfCqqCsrfh+lsefD+ krsCrrrL++hn+rrrk+q+
  Zjn_sc00045.1.g04260.1.am.mkhc 181 CQVEGCKFDLSSAKDYHRKHRVCEAHSKAPKVIVNGLERRFCQQCSRFHALSEFDQIKRSCRRRLNDHNARRRKQQP 257
                                     **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.6E-34174242IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.291178255IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-39179260IPR004333Transcription factor, SBP-box
PfamPF031102.9E-31181254IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGSFGMDWSQ RGSMLWDWEN LSPIGANSND NPTISLQAEP KFACFEATGH ESVHSSCGTF  60
SSNSEMGYCS SKSSIASIDS SPKPGDTVEL NFALVKVLGK GTDHKTALGK VDDARSSPSS  120
VIAVSSGEPV IGLKLGKRTY FEDACGEQSA KNSPLGTSAV TPTTTSTKKA KVAQTAQNMY  180
CQVEGCKFDL SSAKDYHRKH RVCEAHSKAP KVIVNGLERR FCQQCSRFHA LSEFDQIKRS  240
CRRRLNDHNA RRRKQQPDAI SFGASRLSTM FYGIEASVAA NLNGAPDLQR ALSLLSNNSA  300
DASSDQPISQ LHPALVTIAS SSNPVVQGSS GLWQDGTALD HEARFQAFDP VSNRSPIAAP  360
HQLHLLKLPA YDSSPSHYDQ MN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-271812541184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0395215e-76BT039521.1 Zea mays full-length cDNA clone ZM_BFc0017D10 mRNA, complete cds.
GenBankBT0399455e-76BT039945.1 Zea mays full-length cDNA clone ZM_BFc0054D09 mRNA, complete cds.
GenBankBT0538645e-76BT053864.1 Zea mays full-length cDNA clone ZM_BFb0339F10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826432.11e-138squamosa promoter-binding-like protein 3
RefseqXP_025826439.11e-138squamosa promoter-binding-like protein 3
RefseqXP_025826447.11e-138squamosa promoter-binding-like protein 3
SwissprotA2X0Q63e-94SPL3_ORYSI; Squamosa promoter-binding-like protein 3
SwissprotA3A2Z83e-94SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBLA0A1E5VW921e-168A0A1E5VW92_9POAL; Squamosa promoter-binding-like protein 12
STRINGPavir.Aa03225.1.p1e-127(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.34e-38squamosa promoter binding protein-like 2