PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00045.1.g03820.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Whirly | ||||||||
Protein Properties | Length: 163aa MW: 17653 Da PI: 11.2846 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 20.6 | 7.5e-07 | 96 | 125 | 110 | 139 |
Whirly 110 svtnslvkgnesfsvPvskaefavlrsllv 139 +v n+l+k+ +++svP++k+efa+lr++l+ Zjn_sc00045.1.g03820.1.am.mkhc 96 AVLNNLQKTTDRVSVPITKGEFAALRTALS 125 5778899********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54447 | 1.73E-16 | 96 | 163 | IPR009044 | ssDNA-binding transcriptional regulator |
Gene3D | G3DSA:2.30.31.10 | 5.9E-14 | 96 | 144 | IPR009044 | ssDNA-binding transcriptional regulator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
AAVREDTLAH SVRRQPALAL LPSDHRGSDR QGGGTMLRLS RFLPSASSQP PAVVSVVDPQ 60 HSFFIPSAPI SSSVGSALTY RAVAAVAAVF FRGFNAVLNN LQKTTDRVSV PITKGEFAAL 120 RTALSFALPH IMGWDQVLTN HHPAPQGSKP RMERPHPDSE WER |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3012 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 8e-13 | WHIRLY 2 |