PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00045.1.g03240.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 262aa    MW: 29585.5 Da    PI: 6.9101
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00045.1.g03240.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.95.6e-28959151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  krien++nrqvtfskRr g+lKKA+EL vLCda+v v+ifsstgk++ey+s
  Zjn_sc00045.1.g03240.1.sm.mk  9 KRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCS 59
                                  79***********************************************96 PP
2K-box73.94.6e-25711711100
                         K-box   1 yqkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieel 80 
                                   yq++++++  e ++ ++   e++++k+e+++L+  +R++ G+dL+sL+l + + LeqqLe s++k+R++K+ell +q+++l
  Zjn_sc00045.1.g03240.1.sm.mk  71 YQHTTNNHfEEINHDQQIFVEMTRMKEEVDKLEMGIRRYAGDDLSSLTLSDVNDLEQQLEFSVNKVRTRKHELLSQQLDNL 151
                                   66667777777788899999************************************************************* PP

                         K-box  81 qkkekelqeenkaLrkklee 100
                                   ++ke+ l+++n +L ++++e
  Zjn_sc00045.1.g03240.1.sm.mk 152 RRKEHILEDQNSMLCRMINE 171
                                   **************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.282161IPR002100Transcription factor, MADS-box
CDDcd002657.24E-44278No hitNo description
SuperFamilySSF554554.84E-33289IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-293859IPR002100Transcription factor, MADS-box
PfamPF014865.1E-2481169IPR002487Transcription factor, K-box
PROSITE profilePS5129714.36885175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT FSKRRGGLLK KANELAVLCD ARVGVVIFSS TGKMFEYCSP  60
TCSLKELIEQ YQHTTNNHFE EINHDQQIFV EMTRMKEEVD KLEMGIRRYA GDDLSSLTLS  120
DVNDLEQQLE FSVNKVRTRK HELLSQQLDN LRRKEHILED QNSMLCRMIN ENQQQNLAVG  180
RGDMKLAAEM SPLAMLPPPA VAFGHDAAAY YGGESSSSST ALQLMSAAPQ LHHPGGGEGF  240
RLQPTQPNLQ DLRHGHHGLQ LW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-18185183MEF2C
5f28_B1e-18185183MEF2C
5f28_C1e-18185183MEF2C
5f28_D1e-18185183MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020393159.11e-146MADS-box protein ZMM17 isoform X1
RefseqXP_020393160.11e-146MADS-box protein ZMM17 isoform X1
RefseqXP_020393161.11e-146MADS-box protein ZMM17 isoform X1
SwissprotQ8VWM81e-145M17_MAIZE; MADS-box protein ZMM17
TrEMBLA0A1D6H1J31e-144A0A1D6H1J3_MAIZE; Zea mays MADS17
TrEMBLA0A3L6ESV61e-144A0A3L6ESV6_MAIZE; MADS-box protein ZMM17
STRINGSb04g004736.11e-143(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.23e-51MIKC_MADS family protein