PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00045.1.g03230.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YC

Protein Properties

Length: 177aa MW: 19440.1 Da PI: 4.6476

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00045.1.g03230.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	61.9	1.3e-19	66	110	58	102
NF-YC 58 ltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdelk 102 ltlrsw+ +eenkrrt++k+diaaa+trtdi+dflvdi+prde+k Zjn_sc00045.1.g03230.1.sm.mkhc 66 LTLRSWMLTEENKRRTMQKNDIAAAITRTDIYDFLVDIIPRDEMK 110 8*****************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.53E-9	65	106	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	3.2E-12	65	106	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MLSSTGAKRM IHDAEVEAIL PVKIADFGQR RSDMESSSQP QPVMGVTTGT QGYPAATAAY 60 PPPAMLTLRS WMLTEENKRR TMQKNDIAAA ITRTDIYDFL VDIIPRDEMK VEGLGLPRVG 120 LPPAMGAPAD SYPPYYYVPA SQVPGAGMTY GAQQGRPMTY VWPQQPQGQE EEPPEDH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-19	66	106	55	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	84	RRTMQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188795.1	3e-58	nuclear transcription factor Y subunit C-4-like
Swissprot	Q655V5	4e-50	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A0A9DBY3	8e-63	A0A0A9DBY3_ARUDO; Uncharacterized protein
STRING	Traes_6BS_2951D8114.2	1e-57	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP45335	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	4e-30	nuclear factor Y, subunit C2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]