PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00045.1.g01450.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 782aa    MW: 85105.1 Da    PI: 8.3858
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00045.1.g01450.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.99.3e-941915553371
                          GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                   el+l+cA+ ++ gd   a+++L  l+  a p+gd+  Rla++f++ALa+r+ +  ++  +a +p +++      + +a+ +
  Zjn_sc00045.1.g01450.1.am.mk 191 ELVLACADRLHCGDVDGARRVLDVLRSVADPRGDAADRLAHHFARALARRVDG--KGGEDAAAPAPAP---NMPSPSAYLA 266
                                   7899************************************************9..6666666666666...4556678899 PP

                          GRAS  84 fsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeele 159
                                   ++++ P+l+f+hltaNqaIlea+++   +rvHi+D+d+ +G+QWp Llqa+a+R+    gpp++RiTg g     ++++l+
  Zjn_sc00045.1.g01450.1.am.mk 267 YNQIAPFLRFAHLTANQAILEAAATGaaRRVHIVDLDVVHGVQWPLLLQAMAKRAdpdLGPPEVRITGAGT----DRDMLR 343
                                   *********************9987667***************************66666***********....****** PP

                          GRAS 160 etgerLakfAeelgvpfefnvl...vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237
                                   +tg+rL+ fA++l++pf+f++l     ++l + +   L+++p+E+la+n+vl lhrl   +++l++    +L+ +ks++P+
  Zjn_sc00045.1.g01450.1.am.mk 344 RTGDRLRAFASSLNLPFRFDPLllpCPRQLGAGRATGLELHPDETLAINCVLFLHRLG-GEGELAD----FLRWIKSMNPT 419
                                   **********************77667789999************************8.6666666....*********** PP

                          GRAS 238 vvvvveqeadhnse...sFlerflealeyysalfdsleaklpreseerikvErellgreivnvva.cegaerrerhetlek 314
                                   vv+++e+e++ ++    ++ +r++ a++yysa+fd+lea +p+ s +r +vE+e+lg+ei  +v  c g +   r +++e 
  Zjn_sc00045.1.g01450.1.am.mk 420 VVTIAEREVSIGADcpdDLPRRVAAAMDYYSAVFDALEAMVPPGSTDRLSVEHEVLGQEIDAAVDpCPGGW---RSRRFEW 497
                                   **********98766779**********************************************7588888...888899* PP

                          GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371
                                   W ++ ++aG++p pls++a++qa++llr ++ s+gy  ee++g+ +lgW++r+L+s +
  Zjn_sc00045.1.g01450.1.am.mk 498 WASAARAAGLSPRPLSTFAVSQARYLLRLHYpSEGYVAEESDGACFLGWQTRRLMSKT 555
                                   ******************************************************9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.255163537IPR005202Transcription factor GRAS
PfamPF035143.2E-91191555IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MSGAACLCVH TLDAIWEQRA QLSHSIQLLC LASLLQLFHL LASSTACAVW STGRFQSREL  60
ELVLAPVAAH EGQASMESRG DPRHSGSGTG GMIANSALSS LCRPELRFAC ARAPLVFPLP  120
VGVAFPRTTH CRGARFRVQE YFSANSHALL RTLPPDAAML GVPGGDRDDD GAAQPQEKRV  180
RPVAAPASPK ELVLACADRL HCGDVDGARR VLDVLRSVAD PRGDAADRLA HHFARALARR  240
VDGKGGEDAA APAPAPNMPS PSAYLAYNQI APFLRFAHLT ANQAILEAAA TGAARRVHIV  300
DLDVVHGVQW PLLLQAMAKR ADPDLGPPEV RITGAGTDRD MLRRTGDRLR AFASSLNLPF  360
RFDPLLLPCP RQLGAGRATG LELHPDETLA INCVLFLHRL GGEGELADFL RWIKSMNPTV  420
VTIAEREVSI GADCPDDLPR RVAAAMDYYS AVFDALEAMV PPGSTDRLSV EHEVLGQEID  480
AAVDPCPGGW RSRRFEWWAS AARAAGLSPR PLSTFAVSQA RYLLRLHYPS EGYVAEESDG  540
ACFLGWQTRR LMSKTAPACF HGARDLEGKT MVAPSYVPFC HFLAADTQAA VQWVKKEDED  600
AVACVTDTLQ GGSTIGRSMR GSLGLIQLLN LHRSHFSPPL AGTAELADHW QWCRGAEEAT  660
EQRLAISSSA AAYPRKTRPR ARLVARTRQL IVSRTPGSRT PTGCDRKTQA NIFRHRHRDR  720
AAADGTRRPK TTRAPESELC VHAPRLPTDW DLGREPRVMP TLLSEFVHPS LPKYVRAPFA  780
WS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-4821255626373GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4917420.0AB491742.1 Zoysia japonica ZjLsL gene for lateral suppressor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806722.10.0protein MONOCULM 1
TrEMBLW8VJT60.0W8VJT6_9POAL; Lateral suppressor
STRINGPavir.J22770.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.16e-69GRAS family protein