PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00044.1.g04580.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 23740.5 Da PI: 6.6786 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9.1e-19 | 73 | 122 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+G+r+++ +g+W+AeIrdp + +r++lg+f tae Aa+a+++a+++++g+ Zjn_sc00044.1.g04580.1.am.mkhc 73 YRGIRRRP-WGKWAAEIRDPAK---GARVWLGTFATAEAAARAYDRAARRIRGA 122 9*******.**********843...4*************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-22 | 72 | 130 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.592 | 72 | 129 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-36 | 72 | 135 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-31 | 72 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 73 | 84 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.62E-15 | 73 | 130 | No hit | No description |
Pfam | PF00847 | 1.9E-12 | 73 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 95 | 111 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence Send to blast |
MCGGAIISEY IPHRAAGGSK RRSLCGADFW PEAAADFGVD PVNHEHATGA SYPVADQEAD 60 AEPARKRERK TMYRGIRRRP WGKWAAEIRD PAKGARVWLG TFATAEAAAR AYDRAARRIR 120 GAKAKVNFPN EDPPPDNDED AALIHVDYDA VMGFFHHQQL PYVPDAVPIA AAPEVAYVHH 180 QQQQQQHQLQ IPQQHNDAGM ELWTFDNIGT AVPM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 73 | 129 | 6 | 63 | ATERF1 |
3gcc_A | 2e-22 | 73 | 129 | 6 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 63 | 71 | ARKRERKTM |
2 | 65 | 79 | KRERKTMYRGIRRRP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU976870 | 5e-81 | EU976870.1 Zea mays clone 992413 mRNA sequence. | |||
GenBank | KJ728348 | 5e-81 | KJ728348.1 Zea mays clone pUT6630 AP2-EREBP transcription factor (EREB200) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644689.1 | 4e-65 | ethylene-responsive transcription factor RAP2-3 | ||||
Swissprot | P42736 | 3e-38 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A1E5VCJ3 | 1e-66 | A0A1E5VCJ3_9POAL; Uncharacterized protein | ||||
STRING | OMERI07G23220.1 | 1e-64 | (Oryza meridionalis) | ||||
STRING | OPUNC07G24590.1 | 1e-64 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11585 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G16770.1 | 9e-27 | ethylene-responsive element binding protein |