PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00044.1.g01560.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 538aa    MW: 57270.4 Da    PI: 6.5708
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00044.1.g01560.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS184.57.1e-571555362374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.......ss 75 
                                   ++lL  cA a+++g+l +aq+lL  l elas +g++++Rlaa+ ++ALa +l+  v++ ++a    ++ e         + 
  Zjn_sc00044.1.g01560.1.am.mk 155 EQLLNPCAAAIEAGNLPRAQHLLYVLGELASFSGESNHRLAAHGLRALALHLQAAVDQAAAASVKLPSLECPstaafahV- 234
                                   689***************************************************88887765533333222211244321. PP

                          GRAS  76 eelaal....kl....fsevsPilkfshltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp..egpp 140
                                             ++    f+e+sP++ + + +aN aI + + +       +r+H++D+++s+G+Q p+Ll+aL+  p  + pp
  Zjn_sc00044.1.g01560.1.am.mk 235 -----EprvfRAalikFHEASPWFALPNALANAAIAQVATRGaaaeprRRIHVVDIGVSHGVQLPTLLDALTRMPrgSRPP 310
                                   .....12222224578********************9655433666779***********************77755889* PP

                          GRAS 141 slRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrllde 216
                                   s+ +T+ g++++       +        +L ++A+++++++ ++   a  l++l  + + +kpgE+l+V+++++l +    
  Zjn_sc00044.1.g01560.1.am.mk 311 SVHLTVAGPAATPpvpfsASPPGYDSSPQLLRYAKSIELDLAIDQ--APCLDAL--HGI-TKPGEVLVVCVQFRLSHAT-- 384
                                   ********97766899988888899999**************998..3344444..444.899**********999997.. PP

                          GRAS 217 svsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleakl.preseerikvErellgreiv 295
                                       ++e+ +vL+ + +l+P++vv++e + d   ++s   +f+  le  +++++s++a + +r++eer+++E+e  g +  
  Zjn_sc00044.1.g01560.1.am.mk 385 ----ADEQAAVLRSIMNLNPELVVLTELDGDGrRNGSVSSEFAARLELLWTFMESTAAAFkGRDAEERRVMEAE-AGTA-- 458
                                   ....334579********************998999********************666515566777777777.3333.. PP

                          GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslv.lgWkdrpLvsvSa 372
                                     +++   +r +  e  e Wr+r+ +aGF +++++++a+++ak+llrk++  g+++       g++v l Wk++ + ++S 
  Zjn_sc00044.1.g01560.1.am.mk 459 --LTT--VRRGAVVEGWEAWRARMADAGFVEAAFGDEAVETAKSLLRKYD-GGWELVppsPATGAAVrLRWKGQHVSFCSL 534
                                   ..333..23446689***********************************.66787755444677777************* PP

                          GRAS 373 Wr 374
                                   Wr
  Zjn_sc00044.1.g01560.1.am.mk 535 WR 536
                                   *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.778128513IPR005202Transcription factor GRAS
PfamPF035142.5E-54155536IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MSREQDDQER TATTTSSASD WLDDSIAFLA ADLGHGSEGF GWLSTSTTAQ EQQHDAGNFA  60
TETLPDRSVL PHTGPDPVAG YATSSAVAPS PQDRERPNKR KSPEQTAPIG ESRKRPQVGA  120
EPDKAGASSN RKPSKKGGVK GGAAGGLDRD ERWAEQLLNP CAAAIEAGNL PRAQHLLYVL  180
GELASFSGES NHRLAAHGLR ALALHLQAAV DQAAAASVKL PSLECPSTAA FAHVEPRVFR  240
AALIKFHEAS PWFALPNALA NAAIAQVATR GAAAEPRRRI HVVDIGVSHG VQLPTLLDAL  300
TRMPRGSRPP SVHLTVAGPA ATPPVPFSAS PPGYDSSPQL LRYAKSIELD LAIDQAPCLD  360
ALHGITKPGE VLVVCVQFRL SHATADEQAA VLRSIMNLNP ELVVLTELDG DGRRNGSVSS  420
EFAARLELLW TFMESTAAAF KGRDAEERRV MEAEAGTALT TVRRGAVVEG WEAWRARMAD  480
AGFVEAAFGD EAVETAKSLL RKYDGGWELV PPSPATGAAV RLRWKGQHVS FCSLWRPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-2515253785474Protein SHORT-ROOT
5b3h_B1e-2515253731420Protein SHORT-ROOT
5b3h_E1e-2515253731420Protein SHORT-ROOT
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280153e-44KJ728015.1 Zea mays clone pUT6151 GRAS transcription factor (GRAS74) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801770.10.0nodulation-signaling pathway 1 protein-like
TrEMBLA0A2S3H4830.0A0A2S3H483_9POAL; Uncharacterized protein
STRINGSb02g039060.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.13e-81GRAS family protein