PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00044.1.g00620.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 818aa    MW: 89722.9 Da    PI: 10.0996
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00044.1.g00620.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3051.8e-93594492373
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaa 80 
                                   ++lL++cA+a++++d++l+q++L+ l+++a pdgd++qRl+a f+ AL +r +r   ++ + +a+++  +s   ++++++a
  Zjn_sc00044.1.g00620.1.am.mk  59 EQLLVHCANAIEANDATLTQQILWVLNNIAPPDGDSNQRLTAAFLCALVTRASRtgACKAVTAAVAAAVESAALHVHRFTA 139
                                   79***************************************************9333444444444444444446666677 PP

                          GRAS  81 lkl..fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....sk 155
                                    +l  f +++P+++f++ +aN  Ileaveg   vHi+D++ ++++Q p+L++ LasR+egpp lR+T+ +  ++       
  Zjn_sc00044.1.g00620.1.am.mk 140 IELasFIDLTPWHRFGYTAANASILEAVEGFPVVHIVDLSTTHCMQIPTLIDMLASRAEGPPILRLTVADVGSYApppaLD 220
                                   66689***************************************************************9987777777777 PP

                          GRAS 156 eeleetgerLakfAeelgvpfefnvl.......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles......e 223
                                    ++ e+g +L +fA++ +++++f+v+       +++ +++l++++L  +  Eal+Vn+++ lh+++de++ + s       
  Zjn_sc00044.1.g00620.1.am.mk 221 MSYDELGAKLVNFARSRNLSMDFRVVptspadaLTSLVDQLRVQQLVSDGTEALVVNCHMLLHTVPDETAGSVSlaqpvsL 301
                                   8899**********************887666555566677777777777****************998777666657777 PP

                          GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                                   r+ +Lk +++l P +vvvve++ad ++++ + r+  a+++++  +d++++ lp+ se+r+++E+e +g++++nv+a+eg e
  Zjn_sc00044.1.g00620.1.am.mk 302 RTMLLKSIRTLDPALVVVVEEDADFTAGDVVGRLRAAFNFMWIPYDAVDTFLPKGSEQRRWYEAE-VGWKVENVLAQEGVE 381
                                   999**************************************************************.*************** PP

                          GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                   r+er+e  ++W +r+++aGF+pv+++e+aa ++k++l++++  g+ ++ e++ +vl+Wk++++v++SaW
  Zjn_sc00044.1.g00620.1.am.mk 382 RVERQEDRARWGQRMRNAGFRPVAFNEEAAGEVKAMLNEHA-AGWGMKREDDDIVLTWKGHNVVFASAW 449
                                   *****************************************.8899999******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.36132431IPR005202Transcription factor GRAS
PfamPF035146.2E-9159449IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MMQFTHTAPP PPPLNPNNGH GLGLGLFLDV GGAPRARPWP GTPSSKISLG NLNSTSCMEQ  60
LLVHCANAIE ANDATLTQQI LWVLNNIAPP DGDSNQRLTA AFLCALVTRA SRTGACKAVT  120
AAVAAAVESA ALHVHRFTAI ELASFIDLTP WHRFGYTAAN ASILEAVEGF PVVHIVDLST  180
THCMQIPTLI DMLASRAEGP PILRLTVADV GSYAPPPALD MSYDELGAKL VNFARSRNLS  240
MDFRVVPTSP ADALTSLVDQ LRVQQLVSDG TEALVVNCHM LLHTVPDETA GSVSLAQPVS  300
LRTMLLKSIR TLDPALVVVV EEDADFTAGD VVGRLRAAFN FMWIPYDAVD TFLPKGSEQR  360
RWYEAEVGWK VENVLAQEGV ERVERQEDRA RWGQRMRNAG FRPVAFNEEA AGEVKAMLNE  420
HAAGWGMKRE DDDIVLTWKG HNVVFASAWA PLRGLMRSGP TKSITLITRD GPGRHAAVAG  480
WLAAKLKGPP TLGCWYLFIG MALVSKQATA TPACRAIGGW ARASCSSPKD RHVVAHRKLE  540
ENKKKRSFHS LLGTEPVSVS SCESTLPPCS SRHLHLSCSA KRGRRMRRGP GSNVTNHRCL  600
PAMRLIWAST FSRSLDLASE RPGQRLRHFQ ALAEKAESGR RRVHPSRFTY SLHRRQKGQP  660
HRSAGLTKAS TVSERGQRRR MDVAVTERIM RPAAVAVATA RTLKFSGEAM EARASARREF  720
YSAARVAVPV SIRDATGKAC FEEVYLTRRI ARFISWSRWW REEPCSVLTP VALERSPAPR  780
PPAPHLAFPK PLCQGQRIMA LSHGIDDACG RHFYPQHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B4e-513445166474Protein SHORT-ROOT
5b3h_B1e-513445112420Protein SHORT-ROOT
5b3h_E1e-513445112420Protein SHORT-ROOT
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432380.0AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165039.10.0scarecrow-like protein 32
TrEMBLA0A3L6TA250.0A0A3L6TA25_PANMI; Transcription factor containing protein, GRAS family
STRINGTraes_2BS_FDABA21A7.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-157GRAS family protein