PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00044.1.g00580.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 288aa MW: 30213.6 Da PI: 8.9497

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00044.1.g00580.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93	3.5e-29	70	171	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 +C++C+vlr++C+++Cvl+p++ +++q +++ +++k+FG++ ++++l+a+pe +r+++++sl+yeA r+ +Pv+ Zjn_sc00044.1.g00580.1.sm.mkhc 70 SCNGCRVLRKGCSEECVLRPCLqwietAEAQGHATVFIAKFFGRAGLMSFLTAVPEPQRPAVFQSLLYEAAGRTINPVS 148 6*******************9999777889******************************************* PP DUF260 75 Gavgvilklqqqleqlkaelall 97 Gavg++ +++++l+q+++e++l+ Zjn_sc00044.1.g00580.1.sm.mkhc 149 GAVGLLGSGSWHLCQAAVETVLR 171 ***************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.089	69	175	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-24	70	169	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MGLPHPTPWL VRGPSIRALG LAESIYSLPG SPWPKLEGLH ARAKLGCCMR GCGSGAWTRV 60 GALGTTTTMS CNGCRVLRKG CSEECVLRPC LQWIETAEAQ GHATVFIAKF FGRAGLMSFL 120 TAVPEPQRPA VFQSLLYEAA GRTINPVSGA VGLLGSGSWH LCQAAVETVL RGGGIRPLPE 180 FDGGLPGATA DGREPFAFTA RRPVGCSTFS AAKRATTTTT TRIAAPHGAV AEPSCDLGLW 240 LSPESPPAPG DRRRRRPGTP SMTSEESVTT TTTTSSGGRG PELLNLFV

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069813	1e-126	AK069813.1 Oryza sativa Japonica Group cDNA clone:J023030F23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958181.1	1e-115	LOB domain-containing protein 37
Swissprot	Q9FN11	8e-68	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	K3ZWM9	1e-114	K3ZWM9_SETIT; Uncharacterized protein
STRING	Si031011m	1e-115	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	3e-58	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]