PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00043.1.g05060.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 372aa    MW: 41059.7 Da    PI: 10.1743
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00043.1.g05060.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.3e-065880123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C++Cgk F r  nL+ H r H
  Zjn_sc00043.1.g05060.1.am.mk 58 FVCEICGKGFQRDQNLQLHRRGH 80
                                  89*******************88 PP
2zf-C2H213.80.00017134156123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC +C+k++  +s+ k H +t+
  Zjn_sc00043.1.g05060.1.am.mk 134 WKCDKCNKRYAVQSDWKAHSKTC 156
                                   58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.23E-75780No hitNo description
Gene3DG3DSA:3.30.160.609.9E-65880IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6145880IPR007087Zinc finger, C2H2
SMARTSM003550.0125880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SMARTSM0035526099129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.2E-5122155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.23E-7129154No hitNo description
SMARTSM00355110134154IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MLLSNNPALA PVTNQQQQQQ PPPSQQAPPA KRKRNLPGTP GKLVIALSPR TLLATNRFVC  60
EICGKGFQRD QNLQLHRRGH NLPWKLRQRT GKEPRKRVYV CPEKSCVHHN PSRALGDLTG  120
IKKHFCRKHG EKKWKCDKCN KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS RRDSFITHRA  180
FCDALTEETL RLNNQQSHQY LLAAASTPPV PSSTGHIATH VIAPPPLLPA LPWQSFDNTS  240
AQFHHQLGWL HGSKLSISKE VPSLFSSQQH ANPVVPPADM SATALLQKAA QIGAVTSSVV  300
GACFESSGAS SHHHQQNASL GNVPFDDVLS AVRHAGLNQQ DAVGREETRD FLGVGVLQQT  360
LCSSSLPLHG WI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35130194367Zinc finger protein JACKDAW
5b3h_F3e-35130194367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1074681e-171AK107468.1 Oryza sativa Japonica Group cDNA clone:002-129-B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818706.11e-158zinc finger protein MAGPIE-like
RefseqXP_025818707.11e-158zinc finger protein MAGPIE-like
SwissprotQ9FFH31e-110IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLA0A2S3HZD51e-157A0A2S3HZD5_9POAL; Uncharacterized protein
STRINGOS01T0242200-011e-151(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-110C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  2. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]