PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00043.1.g05040.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 279aa MW: 31707.9 Da PI: 8.0467

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00043.1.g05040.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	143.2	1.4e-44	11	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratks 80 lppGfr d+e++v+yLk+k++++ ++++++i++vdiyk++Pw+Lp k+v +e ew+fFs+r++ky++g r+nr++ s Zjn_sc00043.1.g05040.1.sm.mk 11 LPPGFRL---DQEIIVCYLKNKIAATATTVTSIIADVDIYKFDPWELPeKAVVCGEGEWFFFSPRQRKYPNGCRPNRSAGS 88 6889986...9**************999999***********656666888******************** PP NAM 81 gyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 gyWkatg+dk++l+ +++ +g+kk Lvfy+gr+pkg+kt+Wvmheyrl Zjn_sc00043.1.g05040.1.sm.mk 89 GYWKATGTDKPILAGgGSRCIGVKKALVFYQGRSPKGTKTEWVMHEYRL 137 **********856677*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-51	8	166	IPR003441	NAC domain
PROSITE profile	PS51005	48.53	8	168	IPR003441	NAC domain
Pfam	PF02365	8.4E-20	13	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MDEGMGGICQ LPPGFRLDQE IIVCYLKNKI AATATTVTSI IADVDIYKFD PWELPEKAVV 60 CGEGEWFFFS PRQRKYPNGC RPNRSAGSGY WKATGTDKPI LAGGGSRCIG VKKALVFYQG 120 RSPKGTKTEW VMHEYRLLDA DDHIVMRRKD SANSMRLDDW VLCRSRNKGS FVVGLPDDMA 180 PADQSRSSPA RTRAEHVEDW IDDQLLQCLI NSNEPELDHS MINRKRKNNH LSFQAMPNYS 240 YKRANNGMLN STAPFRETSF SVSETDELFY HYKYLISTP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-56	11	170	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-56	11	170	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-56	11	170	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-56	11	170	17	167	NO APICAL MERISTEM PROTEIN
3swm_A	4e-56	11	170	20	170	NAC domain-containing protein 19
3swm_B	4e-56	11	170	20	170	NAC domain-containing protein 19
3swm_C	4e-56	11	170	20	170	NAC domain-containing protein 19
3swm_D	4e-56	11	170	20	170	NAC domain-containing protein 19
3swp_A	4e-56	11	170	20	170	NAC domain-containing protein 19
3swp_B	4e-56	11	170	20	170	NAC domain-containing protein 19
3swp_C	4e-56	11	170	20	170	NAC domain-containing protein 19
3swp_D	4e-56	11	170	20	170	NAC domain-containing protein 19
4dul_A	4e-56	11	170	17	167	NAC domain-containing protein 19
4dul_B	4e-56	11	170	17	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020200711.1	3e-92	NAC transcription factor 32-like
Swissprot	A0SPJ9	6e-65	NAM2_HORVV; NAC transcription factor NAM-2
TrEMBL	A0A3B6GUF8	3e-92	A0A3B6GUF8_WHEAT; Uncharacterized protein
STRING	EMT29965	7e-89	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13797	19	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	7e-59	NAC family protein

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]