PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00043.1.g04920.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 842aa MW: 92452.5 Da PI: 6.6633

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00043.1.g04920.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.8	1.1e-28	588	639	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yFs+++k+AAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Zjn_sc00043.1.g04920.1.sm.mkhc 588 AEKTISLDVLQQYFSGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 639 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.382	578	659	IPR003035	RWP-RK domain
Pfam	PF02042	5.7E-26	591	639	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 842 aa Download sequence Send to blast
MDLDPSPSSA PGDGACGSGD VRPFDTLTTS LLFSSVSTSQ PLPPLPANSS SWLTPPSPLW 60 LFEDRQLLPI ETPAALPEAA AAVVDEVQRA RSGNSDTTTK RVEQINQKWQ LHLSLDDDVT 120 ENSSLFKERL TQALRYFKDS TDQHLLVQVW APVKNGDRCV LTTSGQPFVL DHQSIGLVQY 180 RAVSMMYMFS VDGDNAGELG LPGRVYKQKV PEWTPNVQYY SSKEYPRLNH AISYNVHGTV 240 ALPVFDPSAQ ACIAVVELIM TSKKINYACE VDKVCKALEA VNLKSTEIFD HPNVQICNEG 300 RQTALVEILE ILTVICEEHK LPLAQTWVPC KYRSVLAYGG GLKKSCLSFD GSCMGEVCMS 360 TSDVAFHVID ARMWGFRDAC VEHHLQKGQG VAGRAFVSHK PCFSKDIRQF CKLEYPLVHY 420 ARMFGLAGCF AICLQSSYTG HDDYILEFFL PPDCIDEDDQ NALLDSMLTR MKRCLRSLKV 480 VGDTNLYGVS LQLTNVLKIE NEEFKKDVKI DSSEGGISES PEGDTRRGFH EFDTDNKRLS 540 NMTEGHLLGN EYSQENGTSP TRPNGSGASD SSLLHKTKKP SERRRGKAEK TISLDVLQQY 600 FSGSLKNAAK SLGVCPTTMK RICRQHGISR WPSRKINKVN RSLSKLKQVI VSVQGSDAAF 660 NLTSITGPLP IPVGPSLASL NIEKVAQSKG AELSNPAADG DKESSLQNSL GNDCHFGTLM 720 PQQGFIDNNN NAQLEADKAS HSRSSSGEGS LNSHTSEGSC QGSPANQTFV YKPIASTFAE 780 PQINPEFTKE PFQEPQPLLS RMFIKDSGSS KDLKNLFTSA DRCRVGLGGA VAFPFSSPVK 840 WS

Sequence ? help Back to Top

Protein Sequence Length: 842 aa Download sequence Send to blast

MDLDPSPSSA PGDGACGSGD VRPFDTLTTS LLFSSVSTSQ PLPPLPANSS SWLTPPSPLW  60
LFEDRQLLPI ETPAALPEAA AAVVDEVQRA RSGNSDTTTK RVEQINQKWQ LHLSLDDDVT  120
ENSSLFKERL TQALRYFKDS TDQHLLVQVW APVKNGDRCV LTTSGQPFVL DHQSIGLVQY  180
RAVSMMYMFS VDGDNAGELG LPGRVYKQKV PEWTPNVQYY SSKEYPRLNH AISYNVHGTV  240
ALPVFDPSAQ ACIAVVELIM TSKKINYACE VDKVCKALEA VNLKSTEIFD HPNVQICNEG  300
RQTALVEILE ILTVICEEHK LPLAQTWVPC KYRSVLAYGG GLKKSCLSFD GSCMGEVCMS  360
TSDVAFHVID ARMWGFRDAC VEHHLQKGQG VAGRAFVSHK PCFSKDIRQF CKLEYPLVHY  420
ARMFGLAGCF AICLQSSYTG HDDYILEFFL PPDCIDEDDQ NALLDSMLTR MKRCLRSLKV  480
VGDTNLYGVS LQLTNVLKIE NEEFKKDVKI DSSEGGISES PEGDTRRGFH EFDTDNKRLS  540
NMTEGHLLGN EYSQENGTSP TRPNGSGASD SSLLHKTKKP SERRRGKAEK TISLDVLQQY  600
FSGSLKNAAK SLGVCPTTMK RICRQHGISR WPSRKINKVN RSLSKLKQVI VSVQGSDAAF  660
NLTSITGPLP IPVGPSLASL NIEKVAQSKG AELSNPAADG DKESSLQNSL GNDCHFGTLM  720
PQQGFIDNNN NAQLEADKAS HSRSSSGEGS LNSHTSEGSC QGSPANQTFV YKPIASTFAE  780
PQINPEFTKE PFQEPQPLLS RMFIKDSGSS KDLKNLFTSA DRCRVGLGGA VAFPFSSPVK  840
WS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457049.1	0.0	protein NLP3
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	C5XJJ3	0.0	C5XJJ3_SORBI; Uncharacterized protein
STRING	Sb03g000490.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4778	36	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein