PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00043.1.g04820.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 422aa    MW: 47194.2 Da    PI: 6.0402
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00043.1.g04820.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.64e-121011691891
                                   --HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
                            B3  18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                                   lp kf+++h      +++ ++lede+g   + ++    ++++  l++GW++F+  + +k+gD+vvF+l+g  s++e
  Zjn_sc00043.1.g04820.1.sm.mk 101 LPVKFCSKHlP---MNDTVIVLEDENGDNHDTNY--LATKQG--LSAGWRGFAIKHSIKVGDIVVFELVGLgSKTE 169
                                   8********63...34568***************..666655..9**********************997545444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010199.1E-692176IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-14100163IPR015300DNA-binding pseudobarrel domain
CDDcd100173.52E-16101167No hitNo description
PROSITE profilePS508639.107101177IPR003340B3 DNA binding domain
PfamPF023626.8E-10101168IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.3E-12101163IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MALDQSLKAI KYPAERCPTS YLFLGLQRNR GRPAGSQSAK SKMEQKMALV KQRLALLDSS  60
ESDKDNDDYM AMDDDLRVVV AHQPEPVAIH CGDKEYVEEG LPVKFCSKHL PMNDTVIVLE  120
DENGDNHDTN YLATKQGLSA GWRGFAIKHS IKVGDIVVFE LVGLGSKTEP LKFKARYPFV  180
EENELTIVSP GSPKAERAGE LKSEEDPNID TVHGDVPLID ANGIVSEAID GIRMVDSDID  240
FKDVTSFGNF KIIVDRLVVD CKFHDNLRRT YYELCCSQKA FLHKHLLKQL NLTLVVGVIL  300
ETINIAEGIR ACKAETSSRE DLLVWKKTLE SFEHLGMDVA FLLKRVNALL GIQTQSKNLS  360
ECQKFKELRL ESARAAEKVK ALELQLSSVK GVLQKMDADM KEMESNAKKS DVRLQQLATA  420
PW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660753.11e-141B3 domain-containing protein Os01g0234100
SwissprotQ0JP991e-127Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A3L6SR491e-144A0A3L6SR49_PANMI; B3 domain-containing protein
STRINGSi005087m1e-132(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.15e-20B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]