PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00043.1.g03540.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

BES1

Protein Properties

Length: 348aa MW: 36500.8 Da PI: 8.3792

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00043.1.g03540.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	205.5	1.5e-63	19	161	1	145
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleea 79 gg+gr+ptw+ErEnnkrRERrRRaiaaki+aGLRa+G+yklpk++DnneVlkALc+eAGwvve+DGttyrkgsk++e++ Zjn_sc00043.1.g03540.1.sm.mkhc 19 GGGGRMPTWRERENNKRRERRRRAIAAKIFAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEPDGTTYRKGSKRPERM 97 689************************************************************************** PP DUF822 80 eaagssasaspesslqsslkssalaspvesysaspksssfpspssldsislasa......asllpvlsvlsl 145 + +g s s sp+ss+q +sp++sy+asp+sssfps +s+ +++ ++ + +lp+l++ ++ Zjn_sc00043.1.g03540.1.sm.mkhc 98 DGIGVSVSPSPCSSYQ--------PSPRASYNASPTSSSFPSGASSPFLPPTDIangidgNPILPWLKTFTN 161 **************........999999999999999999998887776655556666777777777655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.3E-61	20	158	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MDSGTGGAFV PGGGGGGGGG GGRMPTWRER ENNKRRERRR RAIAAKIFAG LRAHGGYKLP 60 KHCDNNEVLK ALCNEAGWVV EPDGTTYRKG SKRPERMDGI GVSVSPSPCS SYQPSPRASY 120 NASPTSSSFP SGASSPFLPP TDIANGIDGN PILPWLKTFT NGTASNKHPL LPPLLIHGGS 180 ISAPVTPPLS SPTARTPRMK TDWDESAVQP PWRGTDSPSI VNSTPPSPGR SAVPDPAWLA 240 GIQIASTSPS SPTFSLVSTN PFSVFNEAIR VDNSSRMCAP GQSGTCSPAI PGMLGRPDVH 300 MMDAVSDEFA FGSSANCGQQ AAGLLRAWEG ERIHEDSGSD DLDVTLKL

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MDSGTGGAFV PGGGGGGGGG GGRMPTWRER ENNKRRERRR RAIAAKIFAG LRAHGGYKLP  60
KHCDNNEVLK ALCNEAGWVV EPDGTTYRKG SKRPERMDGI GVSVSPSPCS SYQPSPRASY  120
NASPTSSSFP SGASSPFLPP TDIANGIDGN PILPWLKTFT NGTASNKHPL LPPLLIHGGS  180
ISAPVTPPLS SPTARTPRMK TDWDESAVQP PWRGTDSPSI VNSTPPSPGR SAVPDPAWLA  240
GIQIASTSPS SPTFSLVSTN PFSVFNEAIR VDNSSRMCAP GQSGTCSPAI PGMLGRPDVH  300
MMDAVSDEFA FGSSANCGQQ AAGLLRAWEG ERIHEDSGSD DLDVTLKL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	1e-21	23	92	372	441	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	1e-21	23	92	372	441	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	1e-21	23	92	372	441	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	1e-21	23	92	372	441	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Functional Description ? help Back to Top
Source	Description
UniProt	May function in brassinosteroid signaling. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817932.1	1e-178	protein BZR1 homolog 2
Swissprot	Q0JPT4	1e-163	BZR2_ORYSJ; Protein BZR1 homolog 2
TrEMBL	A0A2S3HYR9	1e-176	A0A2S3HYR9_9POAL; Uncharacterized protein
STRING	Pavir.Ea00221.1.p	1e-172	(Panicum virgatum)
STRING	Sb03g002480.1	1e-174	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1366	38	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	2e-83	BES1/BZR1 homolog 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]