PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00043.1.g03470.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 342aa    MW: 35716 Da    PI: 9.3987
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00043.1.g03470.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.97.2e-25232277146
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 
                                   k+ien +nrqvtf +Rrng+lKKA+ELSvLCdaev +++fss+g+l
  Zjn_sc00043.1.g03470.1.am.mk 232 KPIENATNRQVTFFQRRNGLLKKAYELSVLCDAEVPLVVFSSRGRL 277
                                   78******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.081224277IPR002100Transcription factor, MADS-box
SMARTSM004327.8E-28224283IPR002100Transcription factor, MADS-box
CDDcd002651.31E-30226277No hitNo description
SuperFamilySSF554555.76E-23226278IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-24226246IPR002100Transcription factor, MADS-box
PfamPF003195.0E-21234277IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-24246261IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-24261282IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDEQAVEAWR LLVTLPGPAS APASPHLKLK GKGNGRGNGP HESHAYLRGP YRTTSHHAPP  60
SIAAPAFAHL GLCPHPAPGC PSPPNTGAGA SWFATHACFF SALEVQPGSV FDSAESENRK  120
ESGKQGIAML RPAANGTTFT SLPLLPFPHH LSSIPLASSL SPPPPAPISL SGSQSSPVPK  180
QALATISMLN MMSQTDLSCG PSKVKEQPAT ANSGPSSGST KPGIIRGRIE IKPIENATNR  240
QVTFFQRRNG LLKKAYELSV LCDAEVPLVV FSSRGRLTMP GACVALLQGS QKPKPMAAAA  300
AAEEKRGACI ASGDDAWGEM LRAEKLLCTL GKTMLTVPTQ SC
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4306378e-50AJ430637.1 Zea mays partial mRNA for putative MADS-domain transcription factor (m23 gene).
GenBankEU9608108e-50EU960810.1 Zea mays clone 228787 MADS-box transcription factor 3 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3471634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.21e-25MIKC_MADS family protein