PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00043.1.g03070.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 315aa MW: 34803.1 Da PI: 6.79

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00043.1.g03070.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.5	1.9e-10	47	87	5	45
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L Zjn_sc00043.1.g03070.1.am.mkhc 47 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 87 788*************************9877777766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.9E-8	37	90	No hit	No description
SMART	SM00338	1.7E-7	43	106	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.438	45	89	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.47E-22	47	99	No hit	No description
Pfam	PF00170	5.2E-7	47	87	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.75E-7	47	90	No hit	No description
PROSITE pattern	PS00036	0	50	65	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.3E-34	129	204	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MMADASPRTD TSTDDTDENH MIVVGQGALG AASDSSDRSK DKHGDQKTLR RLAQNREAAR 60 KSRLRKKAYV QQLENSRLKL TQLEQELQRA RQQGIFISSS VDQSQSKSGN GALAFDMEYA 120 RWLEEHNRQI SELRAGVSAH ASDTDLRSVV DKIMSHYDEI FRLKGNAAKA DVFHVLSGMW 180 KTPAERCFLW LGGFRPSEVL KLLSTQLEPL TDQQLSGISS LQQSSQQAED ALSQGMEALQ 240 QSLAETLAGS LSSSGSTGNV ANYMGQMAMA MGKLGTLENF LRQVSTSSFK FMFCIYKGLQ 300 LICWDQGSLE LVTSC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457410.1	1e-180	transcription factor TGA2.3 isoform X1
Refseq	XP_021312815.1	1e-180	transcription factor TGA2.3 isoform X1
Refseq	XP_021312816.1	1e-180	transcription factor TGA2.3 isoform X1
Refseq	XP_021312817.1	1e-180	transcription factor TGA2.3 isoform X2
Refseq	XP_021312818.1	1e-180	transcription factor TGA2.3 isoform X2
Swissprot	P23923	1e-174	HBP1B_WHEAT; Transcription factor HBP-1b(c38)
TrEMBL	C5XQR1	1e-178	C5XQR1_SORBI; Uncharacterized protein
STRING	Sb03g006790.1	1e-179	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	7e-99	TGACG motif-binding factor 6

Publications ? help Back to Top
Tabata T,Nakayama T,Mikami K,Iwabuchi M HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat. EMBO J., 1991. 10(6): p. 1459-67 [PMID:2026143]