PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00043.1.g02810.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 488aa    MW: 53585.5 Da    PI: 11.5288
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00043.1.g02810.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-1657102147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg W + Ed +l+++v+q+G+ +W+ Ia+++  gR++k+c++rw++ 
  Zjn_sc00043.1.g02810.1.am.mk  57 RGHWRPAEDAKLKELVAQHGPQNWNIIAEKLD-GRSGKSCRLRWFNQ 102
                                   899*****************************.***********996 PP
2Myb_DNA-binding543.7e-17109153147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   r  ++ eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ +
  Zjn_sc00043.1.g02810.1.am.mk 109 RRTFSVEEEERLLAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHVL 153
                                   5689******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.64852103IPR017930Myb domain
SMARTSM007171.8E-1356105IPR001005SANT/Myb domain
PfamPF002491.5E-1557102IPR001005SANT/Myb domain
SuperFamilySSF466891.64E-2757154IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-2558110IPR009057Homeodomain-like
CDDcd001671.78E-1260101No hitNo description
PROSITE profilePS5129426.462104158IPR017930Myb domain
SMARTSM007172.5E-15108156IPR001005SANT/Myb domain
PfamPF002494.5E-14109153IPR001005SANT/Myb domain
CDDcd001673.02E-11111154No hitNo description
Gene3DG3DSA:1.10.10.601.4E-19111156IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MVGFFGTVPH PASLLGPSFQ DEREQQVVAE DVYDVEDGGA GYGGGGGAGA QGKLCVRGHW  60
RPAEDAKLKE LVAQHGPQNW NIIAEKLDGR SGKSCRLRWF NQLDPRINRR TFSVEEEERL  120
LAAHRAYGNK WALIARLFPG RTDNAVKNHW HVLMARRQRE QAGSLRRRKP ESSSSSSPTP  180
RPAPRPQRFA PVVVLHHQHH YGSPPPLPFH AAAGAQEASR AYSGCGGGAV DSDESASTCT  240
TDLSLGSAGA APVPNFHQST YRTDYCLIRR CRLFSPLTRS LCSVSRPPQA TTWPLAPRRP  300
RSHQAPGPRS PPRRRPATVT AAAATSPPCP SSTSSASARH DRAAVYRRRS ANSQQKQRRT  360
QITKRNSNAQ GPQTVARSIP SSQTSATVLI GLHLVASTNK NISLCLPGSV GFRWWTVVAR  420
ITAGMDGARL AWHGMAWHGQ RPALPCKPPK LLLCFSRLAR PGWLRTNANW CKADDHADRR  480
RRRSLTDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29561576107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9648551e-147EU964855.1 Zea mays clone 282116 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817647.11e-101transcription factor CSA-like
TrEMBLA0A1E5VEI21e-100A0A1E5VEI2_9POAL; Transcription factor MYB44
STRINGPavir.J31094.1.p1e-103(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.11e-59myb domain protein 56