PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00042.1.g01650.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 400aa MW: 43566.1 Da PI: 8.5704

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00042.1.g01650.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.3e-16	126	184	1	46
TSSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 +g+W++eEd +l++ ++++G+g W+ Ia+ ++ gRt++++k++w++ Zjn_sc00042.1.g01650.1.am.mk 126 KGPWSPEEDAKLKEFIEKHGTGgnwialpqkagmhdPWSIIASQLP-GRTDNDIKNYWNT 184 79******************************************.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.64E-14	112	190	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.4E-23	117	190	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.089	121	190	IPR017930	Myb domain
SMART	SM00717	1.2E-16	125	188	IPR001005	SANT/Myb domain
Pfam	PF00249	2.8E-14	126	184	IPR001005	SANT/Myb domain
CDD	cd00167	1.05E-12	128	186	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MDGCGAVSRR KQRGICMWLD EERFQRETQG IMLAAGVNSA SLIIGRVYQK RLLQPAVSSR 60 RSISLQRGQG FQGLLPTRLP ACPPTNTGQL MFDAQAGLSS GLRAGRSFCC DLMGRAPCCD 120 KNNVKKGPWS PEEDAKLKEF IEKHGTGGNW IALPQKAGMH DPWSIIASQL PGRTDNDIKN 180 YWNTKLKKKL LGSSSMTAPP QRAPRQHHRP LNLMLQNTSS SLSQLTYSGF FPETAGSLHD 240 SIIPALTLPP PQDFMLSSSL AIPNASSLLH AHGGTQQQLL HQHVVKEESG SMIVFGSDQQ 300 SCSSSDVGAH SRPQFSHGKE LSFDGYYGYS LNGSIGNHDH GSLLQLQEHH QQAQVPVEYS 360 YDAIKQLLMS SNGNNLHGGG QDHDDGGMEG FGAQGKVTIR

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MDGCGAVSRR KQRGICMWLD EERFQRETQG IMLAAGVNSA SLIIGRVYQK RLLQPAVSSR  60
RSISLQRGQG FQGLLPTRLP ACPPTNTGQL MFDAQAGLSS GLRAGRSFCC DLMGRAPCCD  120
KNNVKKGPWS PEEDAKLKEF IEKHGTGGNW IALPQKAGMH DPWSIIASQL PGRTDNDIKN  180
YWNTKLKKKL LGSSSMTAPP QRAPRQHHRP LNLMLQNTSS SLSQLTYSGF FPETAGSLHD  240
SIIPALTLPP PQDFMLSSSL AIPNASSLLH AHGGTQQQLL HQHVVKEESG SMIVFGSDQQ  300
SCSSSDVGAH SRPQFSHGKE LSFDGYYGYS LNGSIGNHDH GSLLQLQEHH QQAQVPVEYS  360
YDAIKQLLMS SNGNNLHGGG QDHDDGGMEG FGAQGKVTIR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ317215	3e-40	HQ317215.1 Miscanthus sinensis clone MSSR25 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975125.1	1e-134	transcription factor RAX2
TrEMBL	A0A3L6Q925	1e-137	A0A3L6Q925_PANMI; Transcription factor RAX2-like
STRING	Si010627m	1e-133	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP135	38	412

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	3e-32	myb domain protein 36