PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00042.1.g01650.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 400aa MW: 43566.1 Da PI: 8.5704 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.7 | 4.3e-16 | 126 | 184 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 +g+W++eEd +l++ ++++G+g W+ Ia+ ++ gRt++++k++w++ Zjn_sc00042.1.g01650.1.am.mk 126 KGPWSPEEDAKLKEFIEKHGTGgnwialpqkagmhdPWSIIASQLP-GRTDNDIKNYWNT 184 79********************************************.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.64E-14 | 112 | 190 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.4E-23 | 117 | 190 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.089 | 121 | 190 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-16 | 125 | 188 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-14 | 126 | 184 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.05E-12 | 128 | 186 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MDGCGAVSRR KQRGICMWLD EERFQRETQG IMLAAGVNSA SLIIGRVYQK RLLQPAVSSR 60 RSISLQRGQG FQGLLPTRLP ACPPTNTGQL MFDAQAGLSS GLRAGRSFCC DLMGRAPCCD 120 KNNVKKGPWS PEEDAKLKEF IEKHGTGGNW IALPQKAGMH DPWSIIASQL PGRTDNDIKN 180 YWNTKLKKKL LGSSSMTAPP QRAPRQHHRP LNLMLQNTSS SLSQLTYSGF FPETAGSLHD 240 SIIPALTLPP PQDFMLSSSL AIPNASSLLH AHGGTQQQLL HQHVVKEESG SMIVFGSDQQ 300 SCSSSDVGAH SRPQFSHGKE LSFDGYYGYS LNGSIGNHDH GSLLQLQEHH QQAQVPVEYS 360 YDAIKQLLMS SNGNNLHGGG QDHDDGGMEG FGAQGKVTIR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ317215 | 3e-40 | HQ317215.1 Miscanthus sinensis clone MSSR25 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975125.1 | 1e-134 | transcription factor RAX2 | ||||
TrEMBL | A0A3L6Q925 | 1e-137 | A0A3L6Q925_PANMI; Transcription factor RAX2-like | ||||
STRING | Si010627m | 1e-133 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 3e-32 | myb domain protein 36 |