PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00041.1.g02430.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 679aa MW: 74258.6 Da PI: 7.5539

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00041.1.g02430.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.8	1.1e-28	529	580	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yF++++kdAA++Lgvc+T+LKriCRq+GI+RWP+Rk+k++ Zjn_sc00041.1.g02430.1.sm.mkhc 529 AEKTVSLQVLRQYFAGSLKDAARSLGVCPTTLKRICRQHGIARWPSRKLKKV 580 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.894	517	600	IPR003035	RWP-RK domain
Pfam	PF02042	3.1E-25	532	580	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence Send to blast
MGGGGGGRDP RPSVSALACT PSEGDLDLLE QLLSGDNAWL EVASRSPSSL ASPPATAFFA 60 ADATATTVTA TTGNTGCLLQ TGGASPSSVR ERFNQALAYI RETQSDSDVL VQLWVPVKGH 120 EGRLVLTTSG QPFTLDHRSD SLIQFREVST KYHFSADVTS GTPGLPGRVF IGRLPEWSPD 180 VRYFTSYEYP RVSHAQILDV HGTMGLPVFE KGSYSCLGVI ELIMTKQKLN FTPELNAICS 240 ALQAVNLRST EVSNIPRIKF SSASYKDALP EILEVLKAAC LIHKLPLAQT WVTCAQQGKR 300 GSRHSDENYH YCISTIDEAC FVNEPRMQNF HEACSEHHLL RGEGVAGKAF TTNQPCFQPD 360 IGSSAKLDYP LSHHAKIFNL KGAVAIRLRC TRTGSADFVL EFFLPTDCEA LEEQKAVLDS 420 LSETMRSVCQ TLRVVTDKEM EEETVLEMNE LNSFTPQGKN RVEELSFGYN SRDHRGETTW 480 TSVAETSHQE SGLAALRMHG MFPPDEQGPS LSGAQITAEG RKAKRRTKAE KTVSLQVLRQ 540 YFAGSLKDAA RSLGVCPTTL KRICRQHGIA RWPSRKLKKV DHSLKKLQEI IDSVHGAERA 600 FQLNTLYKDL TNTSISSDNN LSGSITVHLK QSSLTDKHQH HKSISNVPST SHSNSSCGRN 660 SDSSPCCSGG ATKDAPQIK

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence Send to blast

MGGGGGGRDP RPSVSALACT PSEGDLDLLE QLLSGDNAWL EVASRSPSSL ASPPATAFFA  60
ADATATTVTA TTGNTGCLLQ TGGASPSSVR ERFNQALAYI RETQSDSDVL VQLWVPVKGH  120
EGRLVLTTSG QPFTLDHRSD SLIQFREVST KYHFSADVTS GTPGLPGRVF IGRLPEWSPD  180
VRYFTSYEYP RVSHAQILDV HGTMGLPVFE KGSYSCLGVI ELIMTKQKLN FTPELNAICS  240
ALQAVNLRST EVSNIPRIKF SSASYKDALP EILEVLKAAC LIHKLPLAQT WVTCAQQGKR  300
GSRHSDENYH YCISTIDEAC FVNEPRMQNF HEACSEHHLL RGEGVAGKAF TTNQPCFQPD  360
IGSSAKLDYP LSHHAKIFNL KGAVAIRLRC TRTGSADFVL EFFLPTDCEA LEEQKAVLDS  420
LSETMRSVCQ TLRVVTDKEM EEETVLEMNE LNSFTPQGKN RVEELSFGYN SRDHRGETTW  480
TSVAETSHQE SGLAALRMHG MFPPDEQGPS LSGAQITAEG RKAKRRTKAE KTVSLQVLRQ  540
YFAGSLKDAA RSLGVCPTTL KRICRQHGIA RWPSRKLKKV DHSLKKLQEI IDSVHGAERA  600
FQLNTLYKDL TNTSISSDNN LSGSITVHLK QSSLTDKHQH HKSISNVPST SHSNSSCGRN  660
SDSSPCCSGG ATKDAPQIK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800526.1	0.0	protein NLP1-like isoform X1
Refseq	XP_025800527.1	0.0	protein NLP1-like isoform X2
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A3L6TG43	0.0	A0A3L6TG43_PANMI; Protein NLP1 isoform X2
STRING	Pavir.Bb02544.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5554	38	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	1e-143	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]