PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00040.1.g04660.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 223aa MW: 23912.2 Da PI: 8.5947 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 131 | 153 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg F L H+r+H Zjn_sc00040.1.g04660.1.sm.mk 131 HECPVCGLEFAVGQALGGHMRRH 153 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.13E-7 | 67 | 91 | No hit | No description |
Pfam | PF13912 | 1.4E-11 | 68 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.71 | 69 | 91 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.51 | 69 | 96 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.13E-7 | 126 | 153 | No hit | No description |
Pfam | PF13912 | 2.5E-10 | 130 | 155 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 131 | 153 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.93 | 131 | 158 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 133 | 153 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MSKRDRPAAW DEAETPPGAA ETARVLMLLA QAQRRELVPL RHHGHGHGAP FSAGQLQASS 60 RDANDGKVFE CKTCSRQFAT FQALGGHRAS HKRPRPLHRQ PADHDHAELC LGRPTLAPSP 120 PQQQQAKPRV HECPVCGLEF AVGQALGGHM RRHRAEADGS EAPAKLLLPV PAATEKACDV 180 AGGICLDLNL TPSENCAKCR NVLARDVAGK GVHKTLAVLD CSL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 95 | KRPRP |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003231 | 3e-33 | AP003231.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0031D11. | |||
GenBank | AP014957 | 3e-33 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY266289 | 3e-33 | AY266289.1 Oryza sativa (japonica cultivar-group) zinc finger transcription factor ZFP19 (ZFP19) mRNA, complete cds. | |||
GenBank | CP012609 | 3e-33 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. | |||
GenBank | DQ244241 | 3e-33 | DQ244241.1 Zea mays clone 3770 mRNA sequence. | |||
GenBank | EU970219 | 3e-33 | EU970219.1 Zea mays clone 342364 zinc finger, C2H2 type family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818717.1 | 2e-76 | zinc finger protein ZAT12-like | ||||
TrEMBL | A0A2T7DEP3 | 9e-76 | A0A2T7DEP3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea03334.1.p | 2e-73 | (Panicum virgatum) | ||||
STRING | Pavir.J34723.1.p | 3e-73 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6282 | 21 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 1e-24 | C2H2 family protein |