PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00040.1.g04410.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 420aa MW: 44768.4 Da PI: 4.1545

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00040.1.g04410.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	62.4	9.9e-20	40	85	5	50
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtsea 50 ++lPian++r+mkk +Pa+++i+kdake +q+cv+efisf+tse Zjn_sc00040.1.g04410.1.sm.mk 40 GKYLPIANIARVMKKEVPARGQITKDAKEAMQHCVTEFISFITSEV 85 589*****************************************95 PP
2	NF-YB	37.1	7.8e-12	106	149	51	94
NF-YB 51 sdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 s +++++krktingddl+ ++ +G+e+y+e l++yl+kyr+ + Zjn_sc00040.1.g04410.1.sm.mk 106 SYNVKEDKRKTINGDDLIRTMDMIGLEKYAELLRIYLTKYRKSD 149 5578999**********************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.0E-29	40	163	IPR009072	Histone-fold
SuperFamily	SSF47113	5.03E-12	42	86	IPR009072	Histone-fold
Pfam	PF00808	6.7E-13	43	84	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.2E-10	70	88	No hit	No description
PRINTS	PR00615	1.2E-10	109	127	No hit	No description
SuperFamily	SSF47113	4.79E-7	110	162	IPR009072	Histone-fold
PRINTS	PR00615	1.2E-10	128	146	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MGPRVGGGPR VLAGAGFPAM ADDSGKGNQE GVGESEDVRG KYLPIANIAR VMKKEVPARG 60 QITKDAKEAM QHCVTEFISF ITSEVCVVFI SGGIDSDSGG YAFRTSYNVK EDKRKTINGD 120 DLIRTMDMIG LEKYAELLRI YLTKYRKSDN KLTKGGDDSE EMGAINSHVG TKSSTNECDN 180 MLSTKGGDAS VTMDATNPYG GTSSSTIQSD NMLSPKGGDG SIMMDAIDLY CGTSSSPNQS 240 DNMLSTKGDD GSITMDAIDL YGGTSSSPNQ SDNMLSTKGG DGSIMMDAID LYGGTSSSPN 300 QVIPHGVYNQ GMAPMEPQSM STKSGNDSIM MDAVNLHGGI SSTTNQSDNI LSIKGGDGSV 360 MMDTINLYGD ISSPTNQLIP HGVYNQGMAD MEPQNQYFDE DVTQYFDEDV IDPQYHDEDV

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MGPRVGGGPR VLAGAGFPAM ADDSGKGNQE GVGESEDVRG KYLPIANIAR VMKKEVPARG  60
QITKDAKEAM QHCVTEFISF ITSEVCVVFI SGGIDSDSGG YAFRTSYNVK EDKRKTINGD  120
DLIRTMDMIG LEKYAELLRI YLTKYRKSDN KLTKGGDDSE EMGAINSHVG TKSSTNECDN  180
MLSTKGGDAS VTMDATNPYG GTSSSTIQSD NMLSPKGGDG SIMMDAIDLY CGTSSSPNQS  240
DNMLSTKGDD GSITMDAIDL YGGTSSSPNQ SDNMLSTKGG DGSIMMDAID LYGGTSSSPN  300
QVIPHGVYNQ GMAPMEPQSM STKSGNDSIM MDAVNLHGGI SSTTNQSDNI LSIKGGDGSV  360
MMDTINLYGD ISSPTNQLIP HGVYNQGMAD MEPQNQYFDE DVTQYFDEDV IDPQYHDEDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	9e-26	41	147	6	92	Transcription factor HapC (Eurofung)
4g92_B	9e-26	41	147	6	92	Transcription factor HapC (Eurofung)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP45106	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38880.7	5e-31	nuclear factor Y, subunit B1