PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00040.1.g03820.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LBD | ||||||||
Protein Properties | Length: 261aa MW: 28444.1 Da PI: 8.7283 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.2 | 4.2e-41 | 118 | 217 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+k+l ++pe er da+ slvyeA+ r+rdPvyG++g i+ Zjn_sc00040.1.g03820.1.am.mk 118 PCAACKLLRRRCAQECPFAPYFSPHEPQKFAAVHKVFGASNVSKMLLEVPEAERGDAVGSLVYEANLRLRDPVYGCMGAIS 198 7******************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lqqql+ l+ael+++++e Zjn_sc00040.1.g03820.1.am.mk 199 DLQQQLNALEAELEAARQE 217 **************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.161 | 117 | 218 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.3E-41 | 118 | 215 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MQPIRCPRPV RLTWRGRGGW WRYERGCGWR AEPAGDGEGD EHRQRRKGGD GAAGDRGRCS 60 SGRRAQSDSV IERLDKIRKK IKGEPEASGI TPSASTVAAE TPVPRRLGLG GALNTVTPCA 120 ACKLLRRRCA QECPFAPYFS PHEPQKFAAV HKVFGASNVS KMLLEVPEAE RGDAVGSLVY 180 EANLRLRDPV YGCMGAISDL QQQLNALEAE LEAARQEVTK PAEAPGMSTS AVVYVAEAVE 240 QYPSSDRYKS LNTSEHAAYF G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-41 | 118 | 236 | 11 | 131 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-41 | 118 | 236 | 11 | 131 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121919 | 1e-111 | AK121919.1 Oryza sativa Japonica Group cDNA clone:J033106D14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970407.1 | 1e-80 | LOB domain-containing protein 15 | ||||
Swissprot | Q9AT61 | 7e-60 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A1E5VHX5 | 7e-84 | A0A1E5VHX5_9POAL; LOB domain-containing protein 15 | ||||
STRING | OMERI01G32170.1 | 7e-80 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 9e-56 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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