PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00040.1.g03090.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 828aa    MW: 88988.3 Da    PI: 8.8818
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00040.1.g03090.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00048260282123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kCp Cg++F++ + L  H+ +H
  Zjn_sc00040.1.g03090.1.am.mk 260 HKCPVCGEVFPSGMALGGHMGKH 282
                                   79**************9999887 PP
2zf-C2H216.32.7e-05658681123
                                   EEETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                   y+C++Cg+sF ++  L  Hi+  H
  Zjn_sc00040.1.g03090.1.am.mk 658 YVCTICGRSFATPQALGGHISAgH 681
                                   9***************99998777 PP
3zf-C2H212.40.00048697719123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kCp Cg++F++ + L  H+ +H
  Zjn_sc00040.1.g03090.1.am.mk 697 HKCPVCGEVFPSGMALGGHMGKH 719
                                   79**************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035598221244IPR015880Zinc finger, C2H2-like
PfamPF139120.028225239IPR007087Zinc finger, C2H2
PfamPF139121.5E-8260284IPR007087Zinc finger, C2H2
SMARTSM003550.011260282IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.642260287IPR007087Zinc finger, C2H2
PROSITE patternPS000280262282IPR007087Zinc finger, C2H2
PROSITE profilePS510329.783277363IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-4336364IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.40.104.2E-4644708IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF576674.46E-5656719No hitNo description
PfamPF139121.5E-5657676IPR007087Zinc finger, C2H2
SMARTSM003550.052658681IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93658686IPR007087Zinc finger, C2H2
PROSITE patternPS000280660681IPR007087Zinc finger, C2H2
PfamPF139121.5E-8697721IPR007087Zinc finger, C2H2
PROSITE profilePS501578.642697724IPR007087Zinc finger, C2H2
SMARTSM003550.011697719IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280699719IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    Send to blast
MRGLRPFPLP ALLRRVSNVT GPLLRCCSSA GSELTAPTAT AQLKRPGRAL QNCDHCNRSI  60
VVRVPPSVGN RSSALQTLQV EALAQLAFRG PNLQSGHCRQ YWAAPTARCN HDRKTLSPVT  120
HGPPLATVTA ARSATLAALP SAWTRPRASS SPNPVVTPVA FAESNPSPAS SVESSSPQTE  180
FKPSNMAFVH QQQPPEAVDH EHQPALAAPP AQGPDPPQGK YVFRICGRSF ATPQALGGHI  240
SAGHNYRQRK AAEPAERREH KCPVCGEVFP SGMALGGHMG KHRDRPQTEG KKQRVEPPPP  300
APVAPPAPPA SPAAGTMADE GIQTGQSPEV KGIRAFNSED AVARTYDLAA IKYWGSRCVL  360
NFPERADFSV ESYKQEREKM KPMTREGYLA TLRRRSSGFS RGAFEYRGVA CGPAPPERPV  420
GSQDWSFRRQ EIHLCGDIRS TESVPECPVP NDHLPAEEAT PPLQLKPEPE EALLDADDVD  480
HVIAAILAAL CMDTAVRRLR GPVPRPPCAR APTAYCLRSG STQYWAGPTG FQKELSSPSA  540
RRSHNDKTYH PSPMAPPSPR SSPTPATSDR DSRTISDACC SAVGAVDAAT SVPEPRRRPL  600
VRPTPVVFAE SNPSPASCVD PPSEPKPSNE VFVHEQQPRE VDDHEHQPAQ DPDPPKRYVC  660
TICGRSFATP QALGGHISAG HNYRQRKAAD PADRKEHKCP VCGEVFPSGM ALGGHMGKHR  720
DRPQTAGKKS KKRRVEPPPA APVAPLAPLA SAAAAGTMAE VTLPQENQAG QPSHSPPEVN  780
GTRLFGVYMS PNVNIIRLFG VYMSPHVLIE APAEQNPDHG KDRSSNGA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1595602RRRPLVRP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3463434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.26e-14ERF family protein