PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00040.1.g01990.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 572aa    MW: 61394.1 Da    PI: 10.3301
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00040.1.g01990.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002241263223
                                   EETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                   +C+ Cg++F  ++ L+ H  + H
  Zjn_sc00040.1.g01990.1.am.mk 241 TCHRCGERFGKWEALEAHHLSkH 263
                                   6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280242263IPR007087Zinc finger, C2H2
SuperFamilySSF563994.03E-20358571No hitNo description
Gene3DG3DSA:3.90.228.102.7E-9383545IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MGERRRRASA AVAGDVRAEE EEKAAAPGNG APPTVWFALK KSLRCRSAPS EVHAPRPKAA  60
AAPSAGHLAS IVTKRAAPRS GCSRSIANLR DVIHGSKRHP GQPPSCSSPR SIGSSEFLNP  120
IAHEVVLSTN ARCELKITGF GGLGAAGAAH DSDGDAVSSF VGTLRPGTPG PAWAAAAAGH  180
GLQRSGSCRG SSSIRCTPPR SPNVLMERNG SSVISAHRAS CEETASKSGG GNSKGSGGGP  240
TCHRCGERFG KWEALEAHHL SKHAGLTYIA SLFLHGLRNF SRWYRSHCPW IIHPERVVNG  300
GRWRNLVRAT STSVLRKYGF RAHRYVHPNP CNFFSYCEPL LFRILIDRFC VFSFIRTAVT  360
ELMEGDSSRK IVEIICRTSL LKSESSCVRI ERVFKVHNTQ RTLSRFEEHR EAVKLKASKL  420
AKKHPRCLAD GNELLRFHGA TIACALGGAG GSSSSLCASD KCAVCRIIRH GFVSSKKEAG  480
AVGVFTTSTS GRAFESIDAP ADDDLATTRK ALLVCRVIAG RVHRPLDNLR EIAGQTGFDS  540
LAGKVGPYSN IEELYLLNPR ALLPCFVVVC KP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0625000.0AK062500.1 Oryza sativa Japonica Group cDNA clone:001-104-A08, full insert sequence.
GenBankAK0710140.0AK071014.1 Oryza sativa Japonica Group cDNA clone:J023079O17, full insert sequence.
GenBankAK1043110.0AK104311.1 Oryza sativa Japonica Group cDNA clone:001-017-D01, full insert sequence.
GenBankAP0034060.0AP003406.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1070A12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004325.11e-156uncharacterized protein LOC18030024 isoform X1
TrEMBLA0A444F7H21e-171A0A444F7H2_ENSVE; Uncharacterized protein
STRINGOB01G42280.11e-120(Oryza brachyantha)
STRINGSb03g036720.11e-120(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-78C2H2 family protein