PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00040.1.g01230.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 473aa    MW: 49953.5 Da    PI: 7.515
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00040.1.g01230.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260108.16.8e-34296402197
                        DUF260   1 aCaaCkvlrrkCakdCvlapyf..........paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearard 71 
                                   +C aCk+lrr+C+++Cv+ap+f            + +++fa+vhk+FGasnv k+l+++p   r+da+s+++yeA+ar+ d
  Zjn_sc00040.1.g01230.1.am.mk 296 PCGACKFLRRRCVPGCVFAPHFggsggtrehgGGAGAAQFAAVHKVFGASNVAKMLSRVPAALRRDAASTVCYEAQARVAD 376
                                   7*********************999887654433556******************************************** PP

                        DUF260  72 PvyGavgvilklqqqleqlkaelall 97 
                                   PvyG+vg+il+lq+q e l+  lal+
  Zjn_sc00040.1.g01230.1.am.mk 377 PVYGCVGTILALQHQSELLNRRLALA 402
                                   ****************9999888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1280.504.3E-41741No hitNo description
SuperFamilySSF821993.05E-1947196No hitNo description
Gene3DG3DSA:2.170.270.102.3E-2147198No hitNo description
PfamPF050332.3E-952168IPR007728Pre-SET domain
PROSITE profilePS5089120.194295406IPR004883Lateral organ boundaries, LOB
PfamPF031959.2E-38296402IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
GO:0018024Molecular Functionhistone-lysine N-methyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MRNLATTSAV IDSAELVLPW LPPQDLAAAA SACRAFRAAA SAVTARRAAD AARGLEPLPI  60
PFHSSVDLKP YAYFHYTPFS LTVPSSSHAQ PWGCALDEPP CLTWPRPNLD GFPSVECGCA  120
CSAEECGGPE CACVDANADA ADFGSEAGMG SLRECGDGCA CGPSCGNRRT QRGVAVRLRV  180
VRHTQKGWGL HAAEELSRLH FQQATESLAS SVETAHAVGN RRRASGVRSR PPRDTVLINL  240
AFAWPPRRGS YRLVTGQPSF TCMSRTMPPP GKRVGTELAS AADAQSEEAP AGPGAPCGAC  300
KFLRRRCVPG CVFAPHFGGS GGTREHGGGA GAAQFAAVHK VFGASNVAKM LSRVPAALRR  360
DAASTVCYEA QARVADPVYG CVGTILALQH QSELLNRRLA LATVHPSLPS ASPTSQMLNC  420
GAVPQTVDFI DIDHSLRGLP PPLVLMQQPQ QEEEKDEGSP IVDVSWENRN SCD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-312923997104LOB family transfactor Ramosa2.1
5ly0_B4e-312923997104LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0864128e-88BT086412.1 Zea mays full-length cDNA clone ZM_BFc0163O13 mRNA, complete cds.
GenBankKJ7277268e-88KJ727726.1 Zea mays clone pUT5666 LOB transcription factor (LOB11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0FTR91e-131A0A0E0FTR9_ORYNI; Uncharacterized protein
STRINGOMERI01G28910.11e-132(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1125044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.16e-29LOB domain-containing protein 20