PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00040.1.g00690.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 284aa MW: 30582.2 Da PI: 8.8523 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 93.8 | 3.5e-29 | 43 | 118 | 3 | 71 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.......s 71 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +a ++i++l+ ++++++ Zjn_sc00040.1.g00690.1.sm.mk 43 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLSAARHEIDKLPPLQFPPQdlmvghlP 118 78*************************************************************8888733333220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.704 | 44 | 102 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 9.2E-27 | 44 | 105 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MISGSNRQAA DEEQARNHAA LASSRQWSAQ TESRIVRVSR VFGGKDRHSK VKTVKGLRDR 60 RVRLSVPTAI QLYDLQDRLG LNQPSKVVDW LLSAARHEID KLPPLQFPPQ DLMVGHLPAP 120 MPLMHEEKFD QLAAAAALAR ERAKAGHGNG AADAEGSGAH NMGRFPNIGY HHFMGLNSSF 180 AMVNSTMAYS NYSGEAWNNN MHENSAAGSP HVAAVAAAAA AGAQHSSLLS LAPGSHQLVF 240 YPSEGDQQFQ VDNLAGAQHS SLLSLAPGPH QLVFYPSEGD RSSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-20 | 49 | 103 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-20 | 49 | 103 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT085548 | 1e-113 | BT085548.1 Zea mays full-length cDNA clone ZM_BFc0031O04 mRNA, complete cds. | |||
GenBank | BT085813 | 1e-113 | BT085813.1 Zea mays full-length cDNA clone ZM_BFc0067G09 mRNA, complete cds. | |||
GenBank | BT086223 | 1e-113 | BT086223.1 Zea mays full-length cDNA clone ZM_BFc0133E08 mRNA, complete cds. | |||
GenBank | EU970217 | 1e-113 | EU970217.1 Zea mays clone 342355 TCP family transcription factor containing protein mRNA, complete cds. | |||
GenBank | KJ728008 | 1e-113 | KJ728008.1 Zea mays clone pUT6143 TCP transcription factor (TCP30) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814168.1 | 1e-117 | transcription factor PCF5-like | ||||
Refseq | XP_025814169.1 | 1e-117 | transcription factor PCF5-like | ||||
TrEMBL | A0A3L6SMS6 | 1e-119 | A0A3L6SMS6_PANMI; Transcription factor PCF5-like | ||||
STRING | Pavir.J15913.1.p | 1e-117 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 2e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |