PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00040.1.g00310.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Dof | ||||||||
Protein Properties | Length: 594aa MW: 64478.1 Da PI: 10.989 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 116.8 | 8.5e-37 | 259 | 313 | 5 | 59 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 l+cprC s+ntkfCy+nny+++qPr+fCk C+ryWt+GGalrnvPvG+grrkn+ Zjn_sc00040.1.g00310.1.am.mk 259 PLPCPRCRSRNTKFCYFNNYNVNQPRHFCKDCHRYWTAGGALRNVPVGAGRRKNR 313 679**************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 28.733 | 260 | 314 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.4E-30 | 260 | 313 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 262 | 298 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-19 | 269 | 313 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 594 aa Download sequence Send to blast |
MWPKGLKTPQ AGVRGCQRRS GSRHARMTRP HPFAFPQQQR NHTASLATVP YKNGEILLES 60 QTPHAPPPQL IIINIREAEP RREPPRPLPI VTPKSSSQRA AEEKKPQLAA YRVRSLSSRG 120 PTHRLSFGSC RLLQPPAAFL AWKVRMLSHV EMAPAAGGFK LFGKVITQCA APAPPPEEPA 180 SRAAAFVRER ADPDESDQPT VKREACVDHD FEKQQQQQQD QGVGGGGTES GESKAAHPRS 240 RQQDTAEARA AAAASSAPPL PCPRCRSRNT KFCYFNNYNV NQPRHFCKDC HRYWTAGGAL 300 RNVPVGAGRR KNRPLGPVVA AVPGHHHQLQ RHRAAAAAGF VLGFPGNPTS PTSPVCADRW 360 PVCPDRRRVR ASSVSRLERV PMNECAPGSR SHESVPVSSL GLTTSPKGMG RTNKLRPHLF 420 WEMIPNLDEW DDFAFAFGGI ETGHLAEQLL LSTHQCAAKG GRGHCRKKRR GVNIPNRQVA 480 RVISSFAPAT VGAESRQPRA LVVGSCAASA GTEGTFWCCT LGSLLDAGLQ DATDTEQAAR 540 TVTWVGSAAC DFMSAAIMSG NAAAAAVLPL RTERGRENRG GSGTAFPRQR RKRT |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726998 | 4e-87 | KJ726998.1 Zea mays clone pUT3970 C2C2-DOF transcription factor (DOF37) gene, partial cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6495 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34140.1 | 1e-27 | Dof family protein |