PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00039.1.g05010.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 479aa MW: 51689.6 Da PI: 7.5532

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00039.1.g05010.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	114.4	7.2e-36	187	287	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 aCaaCk+ r +C+++C+la+yfpaeq++ f vh+lFG++++l++l+++p+e ++am+++++eAeara+dPv+G+vg+i+ Zjn_sc00039.1.g05010.1.am.mk 187 ACAACKYRRARCTPECPLARYFPAEQNHLFVSVHRLFGVDKILRTLREVPPEYAREAMRTMIFEAEARASDPVSGCVGIIR 267 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkeel 101 ++q++++ ++ el +l++++ Zjn_sc00039.1.g05010.1.am.mk 268 QYQHEVSVANDELMALRHKI 287 ***********9999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.621	186	287	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-34	187	284	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MLGMDQYTSK WSGGTELTGK ANSGDDRLLV VRYGCTCTRV ANESRWIPSG ARWCFRPVAL 60 PRFSMTDLAT VSASETMPWK IDRQIKISPS DPTPQDSLWK EDPIELALYS RHNFSRRAGD 120 ATREERGCLQ RRPRLRRPPC TMSSSSNPPP DHTDGSDASH VGSASSSPPP SGAAGSSERR 180 QNYARSACAA CKYRRARCTP ECPLARYFPA EQNHLFVSVH RLFGVDKILR TLREVPPEYA 240 REAMRTMIFE AEARASDPVS GCVGIIRQYQ HEVSVANDEL MALRHKIATC RSRADGGLPL 300 ADPAIPAVPE QDNVRTRDAL DGGGAAQEPA HSRQPAAGGL PLAYLATRAA PEQNNVRTTD 360 ELDSGGAAQE PVHGRQPAAG GLPLADPAIP AAPEQDNAMT TDAFDGGGAA QAQAQEPVHQ 420 AGAGVAVVDN QQQHHNAHKA PDLEVTTAEH QYTTPVMAAS SSRKRRKVAA PVVKHDADP

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MLGMDQYTSK WSGGTELTGK ANSGDDRLLV VRYGCTCTRV ANESRWIPSG ARWCFRPVAL  60
PRFSMTDLAT VSASETMPWK IDRQIKISPS DPTPQDSLWK EDPIELALYS RHNFSRRAGD  120
ATREERGCLQ RRPRLRRPPC TMSSSSNPPP DHTDGSDASH VGSASSSPPP SGAAGSSERR  180
QNYARSACAA CKYRRARCTP ECPLARYFPA EQNHLFVSVH RLFGVDKILR TLREVPPEYA  240
REAMRTMIFE AEARASDPVS GCVGIIRQYQ HEVSVANDEL MALRHKIATC RSRADGGLPL  300
ADPAIPAVPE QDNVRTRDAL DGGGAAQEPA HSRQPAAGGL PLAYLATRAA PEQNNVRTTD  360
ELDSGGAAQE PVHGRQPAAG GLPLADPAIP AAPEQDNAMT TDAFDGGGAA QAQAQEPVHQ  420
AGAGVAVVDN QQQHHNAHKA PDLEVTTAEH QYTTPVMAAS SSRKRRKVAA PVVKHDADP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-23	188	307	12	131	LOB family transfactor Ramosa2.1
5ly0_B	6e-23	188	307	12	131	LOB family transfactor Ramosa2.1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP64866	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-20	LOB domain-containing protein 22