PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00039.1.g03400.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ZF-HD

Protein Properties

Length: 481aa MW: 51695.2 Da PI: 10.1581

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00039.1.g03400.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	88.1	9e-28	304	359	2	58
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++vrY eC++NhAas+Gg+++DGC+Ef+++ geegt +lkCaACgCHR+FHRr ++ Zjn_sc00039.1.g03400.1.am.mk 304 CSVRYGECRRNHAASTGGYSIDGCREFIAE-GEEGTGGGLKCAACGCHRSFHRRVQV 359 789************************8.999******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	7.0E-22	285	361	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	4.7E-27	306	358	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.7E-20	307	356	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.255	308	357	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MEQIKTSGGR VSGSCVRKLM ARRRVKLMRN QLQEAEATLE SSTTLGSRAV ASAPFCLHPT 60 RAGSTGTRSC CFLLLPACWL ALVLFPGPPA PTFYSALSLS TSLAGGGSAR QGRGVGLLVA 120 AFFLGEGEGE GGLGCQCGGE GEELLQWWRW LGTSRRQGSG VGDNALCAAA VPEVARRSYC 180 GAGVVGCRHS TAVSSGRRRA EKGGKVGARA RHGDDDGGVR PVRGEKASRR AGQASVPFLS 240 PVSGGDVAAA GASSLPVVHS QRHGRPYISR GAESFGWLER GRKLVMKRLL ILRRCEPIVR 300 FTCCSVRYGE CRRNHAASTG GYSIDGCREF IAEGEEGTGG GLKCAACGCH RSFHRRVQVF 360 EALELDPRKQ FVTSRVPCTR LDPQYMCRRS VIQRILFTLE SRITCDGAPG LGERTTRAEI 420 SSRRRAILPG ELNELQCTTA RAPELTLVSE QQLWELMART GNGSGLVLNA AASWWIRWKV 480 V

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MEQIKTSGGR VSGSCVRKLM ARRRVKLMRN QLQEAEATLE SSTTLGSRAV ASAPFCLHPT  60
RAGSTGTRSC CFLLLPACWL ALVLFPGPPA PTFYSALSLS TSLAGGGSAR QGRGVGLLVA  120
AFFLGEGEGE GGLGCQCGGE GEELLQWWRW LGTSRRQGSG VGDNALCAAA VPEVARRSYC  180
GAGVVGCRHS TAVSSGRRRA EKGGKVGARA RHGDDDGGVR PVRGEKASRR AGQASVPFLS  240
PVSGGDVAAA GASSLPVVHS QRHGRPYISR GAESFGWLER GRKLVMKRLL ILRRCEPIVR  300
FTCCSVRYGE CRRNHAASTG GYSIDGCREF IAEGEEGTGG GLKCAACGCH RSFHRRVQVF  360
EALELDPRKQ FVTSRVPCTR LDPQYMCRRS VIQRILFTLE SRITCDGAPG LGERTTRAEI  420
SSRRRAILPG ELNELQCTTA RAPELTLVSE QQLWELMART GNGSGLVLNA AASWWIRWKV  480
V

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1431	34	120

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	3e-22	mini zinc finger 2