PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00039.1.g03370.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 343aa    MW: 35499.2 Da    PI: 8.605
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00039.1.g03370.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.66.4e-333590458
                   ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                                   +Y+eClkNhAaslGghavDGCgEfmp +g++ +++a+lkCaACgCHRnFHRr+ +
  Zjn_sc00039.1.g03370.1.am.mk 35 PMYRECLKNHAASLGGHAVDGCGEFMPLPGATaADPASLKCAACGCHRNFHRRTLV 90
                                  57****************************9999*******************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.1E-283688IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.5223788IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-203787IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.8E-303788IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.81E-16193263IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-28196264IPR009057Homeodomain-like
TIGRFAMsTIGR015653.6E-23205261IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEAMDVKYKT AAFPNGGAVK KVKPAAVPPA AVGEPMYREC LKNHAASLGG HAVDGCGEFM  60
PLPGATAADP ASLKCAACGC HRNFHRRTLV GSAPPPPTAP APLALPAPDR VPAVVDGDDS  120
DSDSDASEYD EERSLSPPLL HHFPAPVAQQ PPPPPAPYIP SAPHMLLSLG SGAPGAAITA  180
VQRLPVHQLT SPSSAPPGGG GAVPRKRFRT KFTAEQKQRM QELSERLGWR LQKRDEAIVD  240
EWCRDIGVGK GVFKVWMHNN KHNFLGGHSA RRSASASAYS GAPTAAAPLH TPTPAGSAPP  300
FHPSVASPPP PPVLTSSPPA APAPTVPAGH QENINGSSSP QSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-212052631775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0881661e-121BT088166.1 Zea mays full-length cDNA clone ZM_BFc0041N13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001145929.21e-123uncharacterized protein LOC100279452
SwissprotQ6ER219e-85ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLB6TFI11e-121B6TFI1_MAIZE; ZF-HD homeobox protein
TrEMBLK0DG721e-121K0DG72_MAIZE; ZHD2 ZF-HD type transcription factor (Fragment)
STRINGGRMZM2G161315_P011e-122(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.13e-48homeobox protein 30