PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00039.1.g02900.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 180aa MW: 20124.9 Da PI: 10.9017 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00038 | 99 | 116 | 3 | 20 |
ETTTTEEESSHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHi 20 C+ C+ +F++ s+L+ H Zjn_sc00039.1.g02900.1.sm.mk 99 CQVCDARFNSASSLQEHR 116 9****************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 0.53 | 15 | 50 | IPR003604 | Zinc finger, U1-type |
SMART | SM00355 | 140 | 18 | 43 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 9.81E-10 | 87 | 131 | No hit | No description |
SMART | SM00451 | 0.22 | 94 | 128 | IPR003604 | Zinc finger, U1-type |
Pfam | PF12874 | 5.6E-7 | 97 | 121 | No hit | No description |
SMART | SM00355 | 6.4 | 97 | 121 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.723 | 97 | 126 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 99 | 121 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.2E-8 | 146 | 177 | No hit | No description |
SMART | SM00451 | 0.45 | 147 | 178 | IPR003604 | Zinc finger, U1-type |
Pfam | PF12874 | 2.2E-7 | 150 | 174 | No hit | No description |
SMART | SM00355 | 12 | 150 | 174 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 152 | 174 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MTTLTPPIIA KKQKPPRWTC DLCQVVTPLN KRKVVEHKAG KRHQSKLKAR NKPARATPGS 60 PPLRRNNVES VAENGGGGNA SRPADGEDRE PPQSARWWCQ VCDARFNSAS SLQEHRGGKL 120 HRGNTEAILA KFRSSYSRKN CDGSGKNVRY YCKTCDVHCT GDTTLASHLV GRRHRRKRCE |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14905 | 2 | 2 |