PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00039.1.g02500.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 176aa MW: 19095.5 Da PI: 8.2337 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 66 | 88 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C++ F ++ L H++ H Zjn_sc00039.1.g02500.1.am.mk 66 FVCMYCDRKFYSSQALGGHQNAH 88 89******************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.53E-8 | 59 | 111 | No hit | No description |
PROSITE profile | PS50157 | 10.803 | 66 | 93 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 68 | 88 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 176 aa Download sequence Send to blast |
MQDGRISVLL FVAADPQTET CATSVHSPVN PSRGTVRHQL AVMEQELNLE LTLLHRSASP 60 EPLGFFVCMY CDRKFYSSQA LGGHQNAHKY ERSLAKHRRE IAAAMRAHGA AAPGSRDASA 120 RSGCAGVGVA ADTKARMDEQ QDAATVCALQ LSNKKRSSEN GYGLQRAEEL DLSLRL |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU972402 | 2e-58 | EU972402.1 Zea mays clone 380740 zinc finger protein 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956890.1 | 1e-48 | uncharacterized protein LOC101776967 | ||||
TrEMBL | A0A0A9HWN6 | 1e-60 | A0A0A9HWN6_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J15401.1.p | 8e-48 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57520.1 | 3e-14 | zinc finger protein 2 |