PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00039.1.g02370.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 395aa    MW: 42685.3 Da    PI: 4.7741
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00039.1.g02370.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19129178255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  Zjn_sc00039.1.g02370.1.am.mkhc 129 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 178
                                     69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.59E-31129187No hitNo description
SMARTSM003804.4E-37129192IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-22129187IPR016177DNA-binding domain
PROSITE profilePS5103223.933129186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-32129187IPR001471AP2/ERF domain
PRINTSPR003672.6E-11130141IPR001471AP2/ERF domain
PfamPF008476.6E-12130178IPR001471AP2/ERF domain
PRINTSPR003672.6E-11152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MCGGAILSSF IRPSGAAAAA KKKKKKQQSR RVTADVLWPG LGRNAREDFE ADFREFERGL  60
SEDDDVDAGG DDEDDDEVPP PAPEWFVFGG AAKPAPVSSR STVDDVITPK SAQHDAPAAK  120
SAKRSRKNQY RGIRQRPWGK WAAEIRDPSK GVRVWLGTYN TAEEAARAYD AEARKIRGKK  180
AKVNFPDEGL NGHKSILKPS AANGTTLAPP SKTCADEAFG DPRTGDNDLF AMFAFNDTKV  240
PVKPAETAAF LAPLKPLVPT EKFGTNMLSD QSSNSYGSSS DFGWDDDTMT PDYTSVFAPT  300
NAVPTYAEPA YLQDGPSKKM RNNYGVAVPK GNGAPNLTQN MSGFDPEMKY VQMPYIESSS  360
DVSMDSLLQD DVAQDGASNG DLWSLDELLM AAGAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-20129186563ATERF1
3gcc_A9e-20129186563ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800946.10.0ethylene-responsive transcription factor 1-like
TrEMBLA0A0A9P8100.0A0A0A9P810_ARUDO; Uncharacterized protein
STRINGPavir.J01991.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.36e-29related to AP2 12