PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00039.1.g01580.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 650aa    MW: 70000.8 Da    PI: 9.9563
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00039.1.g01580.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.62.4e-06173195123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y+C++Cg+ F r  nL+ H r+H
  Zjn_sc00039.1.g01580.1.am.mk 173 YVCEICGQGFQRDQNLQMHRRRH 195
                                   9*********************9 PP
2zf-C2H211.20.0012252273223
                                   EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                    C  C+k +  +s++k H++t+
  Zjn_sc00039.1.g01580.1.am.mk 252 ACARCSKAYAVHSDYKAHLKTC 273
                                   6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.97E-5172195No hitNo description
Gene3DG3DSA:3.30.160.603.8E-5172195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.635173195IPR007087Zinc finger, C2H2
SMARTSM003550.0032173195IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
SMARTSM00355110215245IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.97E-5246271No hitNo description
SMARTSM00355230251278IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009590Biological Processdetection of gravity
GO:0009959Biological Processnegative gravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010031Biological Processcircumnutation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MLAFPENEKR WEASWAPAQC VSLVSVDPPA GPARVGRKAT ANCLCRYFYC YFCSCWSGFF  60
PAKYGKNGDF ACRVLPFVLA RFLPVGGEMT QALAGSFVAR SRKNYVPPML GFCAPADGPP  120
PDEATPEPFR SLQIATTDAT TTTKKKRRPA GTPDPDAEVV SLSPRTLLES DRYVCEICGQ  180
GFQRDQNLQM HRRRHKVPWK LLKRQAGEAA RKRVFVCPEP SCLHHDPAHA LGDLVGIKKH  240
FRRKHSGHRQ WACARCSKAY AVHSDYKAHL KTCGTRGHSC DCGRVFSRKL DGFIGEPCNG  300
RPPHQTAPAP SPPSFRDVTI PEGGSSSAAL LCVRARVFVL AYPLALRLPR ASAAYLPGRG  360
RPHSFGLSGS PARHTYCSLG SQPRARPETV ESFIEHQDTC NAGRTRADLS PACGGGVAAA  420
AGSLQQAPAP VSLSLTASST SPSSDIVISP AAWPGPAMPS PTAATAKFHR FDQVPSPQTP  480
PPPPEHRGGG HNLELQLMPP SSSSAGRASP SMTAYSGPPR SPAVLSHGKD AVMHLTLSIG  540
GQFGGAAERG GVVLDAARTT NKVEAREQLR QAMAEKAAAD EARAEAKRYL ELAEQELATA  600
KRMRRQAQVE LSRAHALREH AVRQVNATLL QITCLSCGHK FRARPPAAPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-14247294349Zinc finger protein JACKDAW
5b3h_F2e-14247294349Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143147KKKRR
2143148KKKRRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00254DAPTransfer from AT2G01940Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3696310.0AK369631.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2094L03.
GenBankAK3735950.0AK373595.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610838.11e-112protein indeterminate-domain 16
TrEMBLA0A3L6QUU41e-114A0A3L6QUU4_PANMI; Protein indeterminate-domain 16-like
STRINGOGLUM09G12720.11e-112(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4502633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.14e-85indeterminate(ID)-domain 14