PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00039.1.g01250.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 677aa    MW: 73101.8 Da    PI: 10.4142
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00039.1.g01250.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.61.9e-07308348954
                                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                    r RR+ri +++ +L++l+P       +K++ a++L +A+ Y+k L
  Zjn_sc00039.1.g01250.1.am.mk 308 ARLRRERISERIRTLQRLVPGG-----TKMDTASMLDEAILYVKFL 348
                                   699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-12300368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-13303360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-11305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-5309348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.23E-5321353No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MILLPGSEDT HFGRELWPVA GGTFRASRGG RRKKQRRGTG DEADDVGNFE RANDGTVDDG  60
SDPRKGCRPS HATHHQAASE QASTTGEIDP SLGQARPAAS SLLIITAMIV EKRRFEAGGV  120
GAQASRRQGN RTCLYSAVSG PCGLPRRGDA MRVRAIYLPE AQFELMKTML QLEQFTALDQ  180
TLMAPMSPPI SPMQTPSTQS HCFSPLPYMS SAMINSSSPD GQYAAAPATY PAAGPEDHLD  240
YVLSPGADAA GALLGSSSSP SSSAAADAMR EAIFHIAALQ PVEIDPEAVR PPKRRNVRIS  300
KDPQSVAARL RRERISERIR TLQRLVPGGT KMDTASMLDE AILYVKFLKS QVQYLERAAA  360
ATHRAAALGA AYPALHAPWQ YVVPHGDIPC MRYDLSSMAK MAVSPVSVAG RCRICLVISL  420
PSLAGIFSTC FCSTIRTQDR RKRAAGLPDP GKCRPPALNT REKFGAWGTL CANQRQLPVS  480
ADRTRRAEPR RRRQLEPLPD ARHVAAGHGR GRRRHAPRGR TRGPRAGERS VPEQDSREIL  540
PWHAQAKVHA SVLVEGTEAK QEGTRPVQFS SGDSVGTRTG KNSNVSAARR HQAGRPDGRR  600
HSVNALFCCA NDVSPHSLER DDMCGVLKSS KHLWLSDELA ARGVIYEPRR ISVAAPTKGR  660
ATWAGSALAS QGGYSAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289294RPPKRR
2308313RLRRER
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9561561e-125EU956156.1 Zea mays clone 1558251 DNA binding protein mRNA, complete cds.
GenBankKJ7269741e-125KJ726974.1 Zea mays clone pUT3675 bHLH transcription factor (bHLH150) gene, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6480222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.19e-36bHLH family protein