PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00039.1.g00260.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Dof | ||||||||
Protein Properties | Length: 227aa MW: 24153.9 Da PI: 9.2755 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.4 | 3.2e-38 | 48 | 105 | 5 | 62 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC+s++tkfCyynny++sqPr+fCk+CrryWtkGG+lrnvPvGgg+rk+ +ss Zjn_sc00039.1.g00260.1.sm.mk 48 GDPCPRCESRDTKFCYYNNYNTSQPRHFCKSCRRYWTKGGSLRNVPVGGGTRKSSSSS 105 578**************************************************98775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-25 | 48 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.705 | 49 | 103 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.7E-32 | 50 | 103 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 51 | 87 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MQEPGRRRAV PFVGVDLRRP KGYPPPAAKV EEEQARVKVN AEAPATAGDP CPRCESRDTK 60 FCYYNNYNTS QPRHFCKSCR RYWTKGGSLR NVPVGGGTRK SSSSSKSSPA APRNPKRSKN 120 SRNRRVAPAP DPAHGTDDTS IAGEVNSETK PAPLTEAAGS VAPAVEDSFK SSMSVALGLG 180 VTDVGGGGKE LPDPGQFEWP SSCGDLGSFW GTGVFADTDP SLFLNLP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 124 | RNPKRSKNSRNRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005759 | 7e-65 | AP005759.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0556A05. | |||
GenBank | AP014965 | 7e-65 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 7e-65 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. | |||
GenBank | KC996733 | 7e-65 | KC996733.1 Oryza sativa transcription factor Dof25 (Dof25) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957110.1 | 3e-80 | dof zinc finger protein MNB1A | ||||
Swissprot | P38564 | 4e-55 | MNB1A_MAIZE; Dof zinc finger protein MNB1A | ||||
TrEMBL | A0A1E5V289 | 9e-93 | A0A1E5V289_9POAL; Dof zinc finger protein MNB1A | ||||
STRING | Si030774m | 1e-79 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21340.1 | 2e-30 | Dof family protein |
Publications ? help Back to Top | |||
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