PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00038.1.g03470.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 181aa MW: 20173.5 Da PI: 10.1368 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.1 | 1e-10 | 115 | 175 | 41 | 99 |
TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE-S CS B3 41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvfrk 99 + +W v++ y +++ r + + W +Fv++ngL+ D++vF+l+ g +++++vv+v+rk Zjn_sc00038.1.g03470.1.sm.mk 115 NNRLKWHVRY-YHGSGTRGFGCRRWVKFVRDNGLRRDDVCVFELVkkGGaRRTTMVVHVVRK 175 45589*****.6666666666679*******************8754555777888888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.94E-13 | 95 | 175 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.01E-10 | 100 | 174 | No hit | No description |
Pfam | PF02362 | 2.3E-8 | 114 | 175 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-9 | 117 | 175 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.587 | 119 | 176 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MGGQRAEHCG LSDSDDDAGT PLRLVESARK ASASKKKSTA GRTNPGGEST ESPDSSHEEE 60 QSDDRRAGSN CCYYSRSASV LTEDEREEAL SLVSIRPGNP AFVTVLQKSH MNRKNNRLKW 120 HVRYYHGSGT RGFGCRRWVK FVRDNGLRRD DVCVFELVKK GGARRTTMVV HVVRKRNGSV 180 M |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808341.1 | 8e-57 | B3 domain-containing protein Os12g0592300-like | ||||
Swissprot | Q2QMT2 | 2e-42 | Y1223_ORYSJ; B3 domain-containing protein Os12g0592300 | ||||
TrEMBL | A0A0A9E2X8 | 5e-59 | A0A0A9E2X8_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Cb00316.1.p | 1e-54 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |