PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00038.1.g02450.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 240aa    MW: 27822.6 Da    PI: 7.895
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00038.1.g02450.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.8e-171057148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    +g+WT++Ed++l++ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
  Zjn_sc00038.1.g02450.1.sm.mkhc 10 KGPWTEQEDLQLLCTVRLFGERRWDFIAKVTGLNRTGKSCRLRWVNYL 57
                                    79********************************************97 PP
2Myb_DNA-binding55.81e-1763108148
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     rgr+T+ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  Zjn_sc00038.1.g02450.1.sm.mkhc  63 RGRMTPHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 108
                                     89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.047557IPR017930Myb domain
SuperFamilySSF466891.76E-299104IPR009057Homeodomain-like
SMARTSM007172.3E-15959IPR001005SANT/Myb domain
PfamPF002491.5E-161057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-201164IPR009057Homeodomain-like
CDDcd001672.36E-111257No hitNo description
PROSITE profilePS5129425.99458112IPR017930Myb domain
SMARTSM007171.1E-1662110IPR001005SANT/Myb domain
PfamPF002492.1E-1563107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2465111IPR009057Homeodomain-like
CDDcd001677.71E-1265108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MVTVREEARK GPWTEQEDLQ LLCTVRLFGE RRWDFIAKVT GLNRTGKSCR LRWVNYLHPG  60
LKRGRMTPHE ERLILELHAR WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK KAQERKRNMS  120
PSSSSSSLTY QSGYPDTPPI IGTEGQELHG GSGCITSILK GDMEGYPMDE LWMEMEAPKV  180
TDFEGEMLQD HACSRSLPEL LPPSAAWDYY YPEPACWKMD DEIKMATQFG YNEGGAGPYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-2871121105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-27711255159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-27711255159MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-28101124105C-Myb DNA-Binding Domain
1msf_C5e-28101124105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321598.11e-133myb-related protein MYBAS2-like isoform X2
SwissprotQ4JL761e-116MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLA0A1B6PDJ91e-132A0A1B6PDJ9_SORBI; Uncharacterized protein
TrEMBLA0A3L6T0P21e-132A0A3L6T0P2_PANMI; Myb-related protein MYBAS2-like
STRINGSb08g018580.11e-132(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.36e-74myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]