PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00038.1.g02270.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 386aa    MW: 42141.1 Da    PI: 9.0794
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00038.1.g02270.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.62.1e-1145113148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....................TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....................kgRtlkqcksrwqkyl 48 
                                   rg+W  +Ed+ lv++v+ +G g+W++ a+  g                     ++Rt+k+c++rw++yl
  Zjn_sc00038.1.g02270.1.am.mk  45 RGPWMVDEDLALVNYVAAHGEGRWNSLAAAAGtyvlafslcfsslanaaiytgLKRTGKSCRLRWLNYL 113
                                   89********************9999999999999999999999999999*****************97 PP
2Myb_DNA-binding55.61.3e-17119162146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg++T++E+ l++d++ ++G++ W++Ia++++ gRt++++k++w++
  Zjn_sc00038.1.g02270.1.am.mk 119 RGNFTADEQMLILDLHSRYGNR-WSKIAQHLP-GRTDNEIKNYWRT 162
                                   89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.54740113IPR017877Myb-like domain
SuperFamilySSF466891.83E-2544160IPR009057Homeodomain-like
SMARTSM007171.5E-844115IPR001005SANT/Myb domain
PfamPF002497.7E-1145113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-1946120IPR009057Homeodomain-like
CDDcd001674.80E-747113No hitNo description
PROSITE profilePS5129423.832114168IPR017930Myb domain
SMARTSM007171.8E-16118166IPR001005SANT/Myb domain
PfamPF002495.2E-16119162IPR001005SANT/Myb domain
CDDcd001671.95E-13121162No hitNo description
Gene3DG3DSA:1.10.10.604.4E-25121167IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MASSPHSSHS ATAPAPTTDA LFARSSGVAV DVDGGAGQKD QLIRRGPWMV DEDLALVNYV  60
AAHGEGRWNS LAAAAGTYVL AFSLCFSSLA NAAIYTGLKR TGKSCRLRWL NYLRPDVKRG  120
NFTADEQMLI LDLHSRYGNR WSKIAQHLPG RTDNEIKNYW RTRVQKHAKQ LNCDANSKRF  180
KDAMRYLWMP HLVDGHRHHL HAADHQQQAT ATAANHDGYY HAAAALSAGA MGVPSSSSDS  240
FATTTSESYE YDAGFPPNWE PSSCYDSAAA GGLYAGEMLV PGGGGDCWVQ ETSQQQAGMM  300
WPEEQKAALG VNGGQFEDAE LKGRERSSAR YERPGPAHHG LSSRERRLPV PGQTCQLLLL  360
LVGAPFSGRP SRRRRRRSIA VGVVYG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-214316625126MYB TRANSFORMING PROTEIN
1mse_C4e-21421661103C-Myb DNA-Binding Domain
1msf_C4e-21421661103C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368376RPSRRRRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0697441e-111BT069744.1 Zea mays full-length cDNA clone ZM_BFb0226N11 mRNA, complete cds.
GenBankKJ7276381e-111KJ727638.1 Zea mays clone pUT5565 MYB transcription factor (MYB100) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962755.11e-98transcription factor JAMYB
TrEMBLK3Z8G12e-97K3Z8G1_SETIT; Uncharacterized protein
STRINGPavir.Cb00499.1.p1e-98(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.12e-68myb domain protein 112