PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00038.1.g00820.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 207aa MW: 23350.3 Da PI: 4.6133 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.2 | 4.6e-11 | 132 | 171 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++RR+riN+++ L+el+P+ +K++ +++Le+AveY+k L Zjn_sc00038.1.g00820.1.am.mk 132 QKRRQRINERLRILQELIPNG-----TKVDISTMLEEAVEYVKFL 171 89*****************97.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.79E-13 | 121 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.348 | 122 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-11 | 128 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.3E-9 | 128 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.32E-10 | 132 | 176 | No hit | No description |
Pfam | PF00010 | 4.2E-8 | 132 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MDISQKVQSS ATDMEIECAT ICEESEMIAH LQSVFWGSSD LDVDPNFPSS NISSLIDNES 60 FCSGLVLNIT QNVAFERKHD NFSSENEATL GSKRKIQTDE LMISGEEDCA VPAAMRARKK 120 SEKDSQSRYA KQKRRQRINE RLRILQELIP NGTKVDISTM LEEAVEYVKF LHLQIKLLSS 180 DELWMYAPLA YRGIDIGGHL DALSAQE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809609.1 | 9e-59 | transcription factor bHLH84-like | ||||
TrEMBL | A0A2S3HE59 | 2e-57 | A0A2S3HE59_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EHD8 | 2e-57 | A0A2T7EHD8_9POAL; Uncharacterized protein | ||||
STRING | ORGLA12G0196200.1 | 5e-57 | (Oryza glaberrima) | ||||
STRING | OBART12G13380.1 | 5e-57 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14508 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27740.1 | 2e-40 | root hair defective 6-like 4 |