PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00038.1.g00770.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 380aa    MW: 40430.6 Da    PI: 9.3446
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00038.1.g00770.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY35.32.3e-11236256222
                                     --SS-EEEEEEE--TT-SS-E CS
                            WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                                     dDgynWrKYGqK+vkgs++pr
  Zjn_sc00038.1.g00770.1.sm.mkhc 236 DDGYNWRKYGQKVVKGSDCPR 256
                                     8*******************9 PP
2WRKY96.91.4e-30280333659
                                     -EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   6 nWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     +WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe
  Zjn_sc00038.1.g00770.1.sm.mkhc 280 RWRKYGQKVVKGNPHPRSYYKCTFAGCNVRKHIERASSDPKAVITTYEGKHNHE 333
                                     8****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.5E-9232256IPR003657WRKY domain
SuperFamilySSF1182904.84E-8234256IPR003657WRKY domain
SMARTSM007741.3E-4235268IPR003657WRKY domain
PROSITE profilePS5081111.003236256IPR003657WRKY domain
PfamPF031065.4E-7236256IPR003657WRKY domain
PROSITE profilePS5081132.73270335IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-30270335IPR003657WRKY domain
SMARTSM007741.8E-33270334IPR003657WRKY domain
SuperFamilySSF1182902.35E-25276335IPR003657WRKY domain
PfamPF031063.2E-23279333IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSARPPPPPR PRLALPPRSN SESLFTGAGD ASPGPLTLAS ALFPPDADAG GGGSGASSST  60
GAGTPSFTQL LIGSLAPPPP AGAPQQQQQQ REAERGRGGV ARAGPVLSVA PPAPSASAAS  120
VFTVPPGLSP SGLLDSPGLL FSPAMGGFGM SHQQALAQVT AQASHSPLRM FDNMEQPSFS  180
TAARSSEAQQ HMNSAANMAG TSEMRMVTTN NDNASFQSVE ASQRYQLNAP VDKPADDGYN  240
WRKYGQKVVK GSDCPRRDDM DDSESRPQEV DDGDSENKRR WRKYGQKVVK GNPHPRSYYK  300
CTFAGCNVRK HIERASSDPK AVITTYEGKH NHEPPVGRGS NQNAGMSQQK GQNNQASISR  360
TDFSNANQRP MEFLQFKREE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-292703351777Probable WRKY transcription factor 4
2lex_A2e-292703351777Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147897.21e-122uncharacterized protein LOC100281507
TrEMBLA0A446SU561e-163A0A446SU56_TRITD; Uncharacterized protein
STRINGGRMZM2G076657_P011e-122(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.13e-32WRKY DNA-binding protein 3