PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00037.1.g05370.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family BES1
Protein Properties Length: 535aa    MW: 60066.8 Da    PI: 6.6274
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00037.1.g05370.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822148.65.3e-46471774134
                          DUF822   4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaa 82 
                                     g++++++E+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r++  p+      
  Zjn_sc00037.1.g05370.1.sm.mkhc  47 GEREREREKERTKLRERHRRAITSRMLAGLRQHGNFPLPARADMNDVLAALARAAGWTVQPDGTTFRAS--PQ------ 117
                                     67899**************************************************************55..44...... PP

                          DUF822  83 gssasaspesslq.sslkssalaspvesysaspksssfpspssldsislasa.......a 134
                                     g++  +  e+++  ++l+s+a+ +p++s+++++++++++spsslds+ +a++        
  Zjn_sc00037.1.g05370.1.sm.mkhc 118 GTFYPTPAETPTLtNTLNSYAIGTPLDSQASVLHTDDSLSPSSLDSVGVAEQsiksdnyG 177
                                     444444444444436789*******************************98855554441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.7E-4347187IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514456.88E-123206535IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.808.7E-128206493IPR013781Glycoside hydrolase, catalytic domain
PfamPF013738.8E-65229493IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.1E-32244258IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.1E-32265283IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.1E-32287308IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.1E-32380402IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.1E-32453472IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MSVKHPHPSP PDEEASLSPP VPPHRRPLGF ASATAPSAGS TPPRRRGERE REREKERTKL  60
RERHRRAITS RMLAGLRQHG NFPLPARADM NDVLAALARA AGWTVQPDGT TFRASPQGTF  120
YPTPAETPTL TNTLNSYAIG TPLDSQASVL HTDDSLSPSS LDSVGVAEQS IKSDNYGNSS  180
SVNTLNCMDN DQLMRSSAVL VGDYTRTPYI PVYASLRMDI INSHCQLVDP ESIRAELQHM  240
KSLNVDGVVI DCWWGIVEAW IPRKYEWSGY RDLFGIVKEF KLKVQVVLSF HGSGETGSGD  300
VLISLPKWIM EIAQENPDIF FTDREGRRNT ECLSWGVDKE RVLRGRTGIE VYFDFMRSFH  360
MEFRNLSEEG LISAIEIGMG ASGELRYPSC PQKLGWRYPG IGEFQCYDRY MQKNLRQAAL  420
SRGHLFWARG PDNAGYYNSR PHETGFFCDG GDYDSYYGRF FLSWYSGVLI DHVDQVLSLA  480
TLAFDGAKII VKVCDAIFRI LKKHSVLLKV ACYGPDFTVQ ENNEAFADPE GLTWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bfn_A9e-8820949311294BETA-AMYLASE
1q6c_A9e-8820949311294beta-amylase
1q6g_A9e-8820949311294beta-amylase
1wdp_A9e-8820949311294Beta-amylase
1wdq_A8e-8820949311294Beta-amylase
1wds_A8e-8820949311294Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811466.10.0beta-amylase 8 isoform X2
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A2S3GL090.0A0A2S3GL09_9POAL; Beta-amylase
STRINGSi016592m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.20.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]