PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00037.1.g05370.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | BES1 | ||||||||
Protein Properties | Length: 535aa MW: 60066.8 Da PI: 6.6274 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 148.6 | 5.3e-46 | 47 | 177 | 4 | 134 |
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaa 82 g++++++E+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r++ p+ Zjn_sc00037.1.g05370.1.sm.mkhc 47 GEREREREKERTKLRERHRRAITSRMLAGLRQHGNFPLPARADMNDVLAALARAAGWTVQPDGTTFRAS--PQ------ 117 67899**************************************************************55..44...... PP DUF822 83 gssasaspesslq.sslkssalaspvesysaspksssfpspssldsislasa.......a 134 g++ + e+++ ++l+s+a+ +p++s+++++++++++spsslds+ +a++ Zjn_sc00037.1.g05370.1.sm.mkhc 118 GTFYPTPAETPTLtNTLNSYAIGTPLDSQASVLHTDDSLSPSSLDSVGVAEQsiksdnyG 177 444444444444436789*******************************98855554441 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.7E-43 | 47 | 187 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
SuperFamily | SSF51445 | 6.88E-123 | 206 | 535 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 8.7E-128 | 206 | 493 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF01373 | 8.8E-65 | 229 | 493 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 4.1E-32 | 244 | 258 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 4.1E-32 | 265 | 283 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 4.1E-32 | 287 | 308 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 4.1E-32 | 380 | 402 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 4.1E-32 | 453 | 472 | IPR001554 | Glycoside hydrolase, family 14 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 535 aa Download sequence Send to blast |
MSVKHPHPSP PDEEASLSPP VPPHRRPLGF ASATAPSAGS TPPRRRGERE REREKERTKL 60 RERHRRAITS RMLAGLRQHG NFPLPARADM NDVLAALARA AGWTVQPDGT TFRASPQGTF 120 YPTPAETPTL TNTLNSYAIG TPLDSQASVL HTDDSLSPSS LDSVGVAEQS IKSDNYGNSS 180 SVNTLNCMDN DQLMRSSAVL VGDYTRTPYI PVYASLRMDI INSHCQLVDP ESIRAELQHM 240 KSLNVDGVVI DCWWGIVEAW IPRKYEWSGY RDLFGIVKEF KLKVQVVLSF HGSGETGSGD 300 VLISLPKWIM EIAQENPDIF FTDREGRRNT ECLSWGVDKE RVLRGRTGIE VYFDFMRSFH 360 MEFRNLSEEG LISAIEIGMG ASGELRYPSC PQKLGWRYPG IGEFQCYDRY MQKNLRQAAL 420 SRGHLFWARG PDNAGYYNSR PHETGFFCDG GDYDSYYGRF FLSWYSGVLI DHVDQVLSLA 480 TLAFDGAKII VKVCDAIFRI LKKHSVLLKV ACYGPDFTVQ ENNEAFADPE GLTWQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1bfn_A | 9e-88 | 209 | 493 | 11 | 294 | BETA-AMYLASE |
1q6c_A | 9e-88 | 209 | 493 | 11 | 294 | beta-amylase |
1q6g_A | 9e-88 | 209 | 493 | 11 | 294 | beta-amylase |
1wdp_A | 9e-88 | 209 | 493 | 11 | 294 | Beta-amylase |
1wdq_A | 8e-88 | 209 | 493 | 11 | 294 | Beta-amylase |
1wds_A | 8e-88 | 209 | 493 | 11 | 294 | Beta-amylase |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00543 | DAP | Transfer from AT5G45300 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811466.1 | 0.0 | beta-amylase 8 isoform X2 | ||||
Swissprot | Q9FH80 | 0.0 | BAM8_ARATH; Beta-amylase 8 | ||||
TrEMBL | A0A2S3GL09 | 0.0 | A0A2S3GL09_9POAL; Beta-amylase | ||||
STRING | Si016592m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2141 | 36 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45300.2 | 0.0 | beta-amylase 2 |
Publications ? help Back to Top | |||
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