PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00037.1.g04870.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Nin-like | ||||||||
Protein Properties | Length: 173aa MW: 18804.4 Da PI: 10.2773 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 24.2 | 6.8e-08 | 33 | 58 | 2 | 27 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgv 27 ek++sle+l++yFs+ +kdAA++Lgv Zjn_sc00037.1.g04870.1.am.mk 33 EKTVSLEELQRYFSGRMKDAARSLGV 58 799**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54277 | 4.12E-7 | 135 | 172 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 7.8E-6 | 137 | 173 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MDNGEPKEGE DPEPQVSRRK RRRRKKLAKR ENEKTVSLEE LQRYFSGRMK DAARSLGVPY 60 SQQSMAAPAA SHQAPAPAPA TVHDPPAALL PYLSSAVEVT SSQGSCQEPP PPPPPLPPRM 120 STAIRKKPFH AGDTELVTVK ASYRGDIVRF RVPSSAGVEA VMGEVAKRLG LET |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 25 | RRKRRRRKK |
2 | 18 | 22 | RKRRR |
3 | 18 | 25 | RKRRRRKK |
4 | 19 | 24 | KRRRRK |
5 | 19 | 25 | KRRRRKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002453272.1 | 1e-38 | protein NLP3 | ||||
TrEMBL | A0A3L6RS29 | 5e-38 | A0A3L6RS29_PANMI; Uncharacterized protein | ||||
STRING | Sb04g002940.1 | 6e-38 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6269 | 29 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 3e-07 | NIN like protein 7 |