PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00036.1.g01730.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 618aa    MW: 67642 Da    PI: 9.9943
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00036.1.g01730.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.12.4e-321912822102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   F+ k+y+++ d++++ l++w +++nsfvv+d+  f++ +Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+
  Zjn_sc00036.1.g01730.1.am.mk 191 FIAKTYQMVCDPRTDALVRWGKENNSFVVVDPAGFSQLLLPCFFKHSNFSSFVRQLNTYGFRKVHPDR---------WEFA 262
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   h+sF +g+ +ll +i r+k+
  Zjn_sc00036.1.g01730.1.am.mk 263 HESFLRGQMHLLPRIVRRKK 282
                                   *****************987 PP
2GATA24.73.3e-08508542135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C +C + +Tp+WR      ++LCnaC ++ r  g+
  Zjn_sc00036.1.g01730.1.am.mk 508 CLQCDSAETPQWRLRLLRRSMLCNACDVRLRADGV 542
                                   899*************99999*****999987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-35187280IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.0E-50187280IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.72E-32188280IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-28191280IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-16191214IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-16229241IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340230254IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-16242254IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004013.1E-5502553IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.292502556IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.37E-8502549No hitNo description
Gene3DG3DSA:3.30.50.103.3E-8503556IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.6E-6508541IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MPNLETAIER PLGDQLGSVP SVCPRPGRRA SLTARRRLAD QPCQQQVRLS GGAAGPPAGC  60
SDEPHATPEL SARPTAAPFR WPFGAGHGGS RLALARCPGG RRRRAAAHRN NIDHKTFADH  120
ESTLVARASI SAPPAREGKR GSSPDAFLPL VTALVIERER ERARRMDGLH TELALGLIGF  180
GGGAQLQTAP FIAKTYQMVC DPRTDALVRW GKENNSFVVV DPAGFSQLLL PCFFKHSNFS  240
SFVRQLNTYG FRKVHPDRWE FAHESFLRGQ MHLLPRIVRR KKRGEGGASC SAPAGGGGGL  300
ANLGDAHRPL DEGNDEEREA LAEEVQRLRQ EQATIGEELE RMSRRLQATE RQPDQLMSFL  360
ARLAEDPDGV TRNLMEQAAE KKRRRLQLDS APVVSPVPPP PLPPASPPPL LALGGAAVDC  420
DDWQWAEQKP AILLPSFDPP SSRCEVQQVP EFAAGRDVGA GVITFDRDTA AETPFPFCLL  480
GQGLVMPSPS DTAAAPSMVR PTKKMKRCLQ CDSAETPQWR LRLLRRSMLC NACDVRLRAD  540
GVLRETEQRA AQRRARHAAA CGAGLTGSGQ ALVKDHQPAT LFLQVNLHRR CGYRAVHQVR  600
GGVDQQVARR RRPCHVQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A5e-2219128010110Heat shock factor protein 1
5hdn_A5e-2219128010110Heat shock factor protein 1
5hdn_B5e-2219128010110Heat shock factor protein 1
5hdn_C5e-2219128010110Heat shock factor protein 1
5hdn_D5e-2219128010110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1381385KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0694791e-129AK069479.1 Oryza sativa Japonica Group cDNA clone:J023019J23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817664.11e-137heat stress transcription factor C-1a-like
SwissprotQ6VBA41e-116HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBLA0A2S3HTS71e-136A0A2S3HTS7_9POAL; Uncharacterized protein
TrEMBLA0A2T7DJI41e-136A0A2T7DJI4_9POAL; Uncharacterized protein
STRINGPavir.Eb01618.1.p1e-132(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-60heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]