PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00034.1.g05040.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 510aa    MW: 57411.4 Da    PI: 10.1283
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00034.1.g05040.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.53.5e-28123173151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   k ien++nrqvtfskRrng+lKKA E+SvLCdaev v++fss gkly+++s
  Zjn_sc00034.1.g05040.1.am.mk 123 KLIENSTNRQVTFSKRRNGLLKKAREISVLCDAEVGVVVFSSAGKLYDFCS 173
                                   569**********************************************96 PP
2K-box471.1e-162042561769
                         K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                                   l+ e++++kke++n+q e+Rhl+GedL+sL+ keL  + ++L+++l++  +k 
  Zjn_sc00034.1.g05040.1.am.mk 204 LSAEIDRVKKENDNMQIELRHLKGEDLNSLQPKELIMIDEALDNGLTNLNDKL 256
                                   578********************************************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.92E-28115176IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-41115174IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.903115175IPR002100Transcription factor, MADS-box
CDDcd002658.11E-39116179No hitNo description
PRINTSPR004045.1E-28117137IPR002100Transcription factor, MADS-box
PROSITE patternPS003500117171IPR002100Transcription factor, MADS-box
PfamPF003193.5E-25125171IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-28137152IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-28152173IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.228201290IPR002487Transcription factor, K-box
PfamPF014861.9E-10204255IPR002487Transcription factor, K-box
PfamPF119094.2E-50361498IPR020874NAD(P)H-quinone oxidoreductase, subunit N
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009817Biological Processdefense response to fungus, incompatible interaction
GO:0010258Biological ProcessNADH dehydrogenase complex (plastoquinone) assembly
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0009535Cellular Componentchloroplast thylakoid membrane
GO:0009941Cellular Componentchloroplast envelope
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016655Molecular Functionoxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MSNDDFIIRR RPTHTLRKLG ARFSSSLGFR HQLSRRTGRY TKKPTDDRQS SIQSTCRFRR  60
TALNRPESPL VGIPLPAMAI PFTPRPPPPP IPPNPITPAP PTEPQLQRAC CARRMGRGKT  120
EIKLIENSTN RQVTFSKRRN GLLKKAREIS VLCDAEVGVV VFSSAGKLYD FCSPKTSCVP  180
CRACSAPFVL PLCLPLSFHD ALILSAEIDR VKKENDNMQI ELRHLKGEDL NSLQPKELIM  240
IDEALDNGLT NLNDKLRQQD IALSGSMRDL ELGYHADRDF EAQMPITFRV QPSWTKQLPP  300
TQPRSMWSPA AAARTVSSPA LPTPPFRRGA ARRGRVTMPP PARSTLFDFV GGDLVKPDLG  360
KWLDDVEEHK ALAIYPPHEG GYEGRYLNRL KRQGYYFLDL TARGLGDPET TLTKIHPVCP  420
PSLGRQPKAR WYFPPEVDYR LSLLHPDAKG LVVWVIEAKV LSKAELQFLA ILPDLRPKVR  480
VIAECGNWRN FVWKPLKQIA GIEPDPDAEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6hum_N1e-273614968143NAD(P)H-quinone oxidoreductase subunit N
6nbq_N1e-273614968143NAD(P)H-quinone oxidoreductase subunit N
6nbx_N1e-273614968143NAD(P)H-quinone oxidoreductase subunit N
6nby_N1e-273614968143NAD(P)H-quinone oxidoreductase subunit N
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0345570.0BT034557.1 Zea mays full-length cDNA clone ZM_BFb0001A15 mRNA, complete cds.
GenBankBT0377660.0BT037766.1 Zea mays full-length cDNA clone ZM_BFb0194H01 mRNA, complete cds.
GenBankBT0654250.0BT065425.1 Zea mays full-length cDNA clone ZM_BFb0151I13 mRNA, complete cds.
GenBankBT0850060.0BT085006.1 Zea mays full-length cDNA clone ZM_BFb0224O04 mRNA, complete cds.
GenBankEU9554090.0EU955409.1 Zea mays clone 1531490 NADH dehydrogenase I subunit N mRNA, complete cds.
GenBankEU9647930.0EU964793.1 Zea mays clone 281569 NADH dehydrogenase I subunit N mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP894322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.12e-41MIKC_MADS family protein