PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00034.1.g04140.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 323aa MW: 35108.3 Da PI: 7.5039

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00034.1.g04140.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.3e-12	242	287	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + +e+L AveYIk+Lq Zjn_sc00034.1.g04140.1.am.mkhc 242 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSEMLDTAVEYIKELQ 287 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.348	236	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-15	239	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.10E-12	240	291	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.5E-15	241	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-10	242	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-12	242	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
QPSRPGSSRH VSTVGSAADV VRVAGFLSPG PACWRASDWP GPRTCKPFQL LVSRFSSAHQ 60 CSEWLLPSTG DADTQRTDTI SDIHACMAGM SATTGMGSYP HGGTDTMAHG HSRRLSSQWS 120 FSRQDLPQIS EMGMIPDIGE SIIAGGCNSS SDGGAQSSYL SRNFSVGSWD DTNSIMFSSP 180 GKKVKVDAAD DMVTSFSNID SQFGLSKSSL DMSGMDDYLQ LQQDSIACRV RAKRGCATHP 240 RSIAERERRT RISKRLKKLQ DLVPNMDKQT NTSEMLDTAV EYIKELQSQV ERAEFAVRHP 300 PPGGDPLLLL LLPPPGARER TQQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814593.1	1e-120	transcription factor bHLH128-like
TrEMBL	A0A0A9DES0	1e-127	A0A0A9DES0_ARUDO; Uncharacterized protein
STRING	Pavir.J01306.1.p	1e-116	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7071	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	8e-41	bHLH family protein