PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00034.1.g03690.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 334aa    MW: 35931.3 Da    PI: 4.8322
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00034.1.g03690.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-05308329122
                                     EEETTTTEEESSHHHHHHHHHH CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                                     ++C+ C+k+F++   L++H + 
  Zjn_sc00034.1.g03690.1.sm.mkhc 308 HSCKSCSKTFNSAGALESHKKA 329
                                     79*****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.15E-6296332No hitNo description
PROSITE profilePS5015710.637308334IPR007087Zinc finger, C2H2
PfamPF128743.3E-4309332No hitNo description
PROSITE patternPS000280310332IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEFWGHEVKP GMTVSCKAGD GFVIHLSQAA LGETKKGSEN VIVFVKTGDK KFVIGTLSAD  60
KHPQISCDLI FDEAFELSHN SKTTSVFLCG YKSMIPDMYD SGEDEDEEME TEIPVKKNET  120
EKIAAKVPAN DGRKEKQDND KESDDSETSS DTDDFSVSDS DDMDEDVSSE DDNSRLSSGG  180
DDSSDDSEDD SDDDSEDEET PVPEAGKKRA AATALKTPAS DKKAKISTPK KETGDKKGVH  240
VATPHPAKKA SKTPADSKPK EKGPKTPADS KPKENDPKTP ADSKPKEKAP KTPADSKAKE  300
KSPKSGSHSC KSCSKTFNSA GALESHKKAK KHEA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682081.13e-90histone deacetylase HDT2 isoform X1
TrEMBLA0A0A9EU222e-99A0A0A9EU22_ARUDO; Hda106
STRINGSi004270m7e-85(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.25e-26histone deacetylase 3