PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00034.1.g02390.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 302aa    MW: 32900.9 Da    PI: 9.1769
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00034.1.g02390.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.32.8e-2524110186
                      trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                                   rWt++e+l+Li+arr me+r  + + +  p+W++vs+++r++g+er+p qC+++w nl+++ kki ++e+k +++++ ++ 
  Zjn_sc00034.1.g02390.1.sm.mk  24 RWTRHETLVLIQARRAMERRGLQqTVRPRPKWAAVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEGKAAAGAVPQHE 104
                                   8*****************9987615688********************************************999999999 PP

                      trihelix  81 yfdqle 86 
                                    f +++
  Zjn_sc00034.1.g02390.1.sm.mk 105 SFWDMR 110
                                   999995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.1311782IPR017877Myb-like domain
SuperFamilySSF466896.37E-521107IPR009057Homeodomain-like
CDDcd122035.03E-142388No hitNo description
Gene3DG3DSA:1.10.10.602.4E-42481IPR009057Homeodomain-like
PfamPF138372.2E-112495No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSTNEKSPPA EAAAASTPRS RLPRWTRHET LVLIQARRAM ERRGLQQTVR PRPKWAAVSA  60
YCRRHGVERG PMQCRKRWGN LSWDLKKIVA WEGKAAAGAV PQHESFWDMR GEERRARQLP  120
SSFDREVYNA IVAGTAAVEE AAAAAVLPDF GEEMDGAYEQ PPIMVVPISA RRYEPPPASS  180
EHECSNPVDT HFGATTAATE SERKKVGGAA SDKNSTSQQD AGGGPKDSDA TFVAGAEDTG  240
TPAATVSIGK QVIEALERGN RALMQHLEVK RSNRDADRQQ RTALLAALDR LGDAVARIAD  300
KL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280311e-136KJ728031.1 Zea mays clone pUT6171 trihelix transcription factor (THX11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819294.11e-149trihelix transcription factor ASR3-like
TrEMBLA0A2S3HNF51e-148A0A2S3HNF5_9POAL; Uncharacterized protein
STRINGPavir.Ea03865.1.p1e-139(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.14e-34Trihelix family protein